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SLFN12L (schlafen family member 12 like)

Identity

Alias_namesschlafen family member 12-like
Other alias-
HGNC (Hugo) SLFN12L
LocusID (NCBI) 100506736
Atlas_Id 73511
Location 17q12  [Link to chromosome band 17q12]
Location_base_pair Starts at 35474923 and ends at 35487739 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CLIP1 (12q24.31) / SLFN12L (17q12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLFN12L   33920
Cards
Entrez_Gene (NCBI)SLFN12L  100506736  schlafen family member 12 like
Aliases
GeneCards (Weizmann)SLFN12L
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr17:35474923-35487739 [Contig_View]  SLFN12L [Vega]
TCGA cBioPortalSLFN12L
AceView (NCBI)SLFN12L
Genatlas (Paris)SLFN12L
WikiGenes100506736
SOURCE (Princeton)SLFN12L
Genetics Home Reference (NIH)SLFN12L
Genomic and cartography
GoldenPath hg38 (UCSC)SLFN12L  -     chr17:35474923-35487739 -  17q12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLFN12L  -     17q12   [Description]    (hg19-Feb_2009)
EnsemblSLFN12L - 17q12 [CytoView hg19]  SLFN12L - 17q12 [CytoView hg38]
Mapping of homologs : NCBISLFN12L [Mapview hg19]  SLFN12L [Mapview hg38]
OMIM614956   
Gene and transcription
Genbank (Entrez)AK172761 BN000147 DA814276
RefSeq transcript (Entrez)NM_001145027 NM_001195790
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLFN12L
Cluster EST : UnigeneHs.447559 [ NCBI ]
CGAP (NCI)Hs.447559
Gene ExpressionSLFN12L [ NCBI-GEO ]   SLFN12L [ EBI - ARRAY_EXPRESS ]   SLFN12L [ SEEK ]   SLFN12L [ MEM ]
Gene Expression Viewer (FireBrowse)SLFN12L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100506736
GTEX Portal (Tissue expression)SLFN12L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6IEE8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6IEE8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6IEE8
Splice isoforms : SwissVarQ6IEE8
PhosPhoSitePlusQ6IEE8
Domains : Interpro (EBI)Schlafen    Schlafen_AAA_dom   
Domain families : Pfam (Sanger)AlbA_2 (PF04326)   
Domain families : Pfam (NCBI)pfam04326   
Conserved Domain (NCBI)SLFN12L
DMDM Disease mutations100506736
Blocks (Seattle)SLFN12L
SuperfamilyQ6IEE8
Peptide AtlasQ6IEE8
IPIIPI00455328   IPI00939958   
Protein Interaction databases
DIP (DOE-UCLA)Q6IEE8
IntAct (EBI)Q6IEE8
BioGRIDSLFN12L
STRING (EMBL)SLFN12L
ZODIACSLFN12L
Ontologies - Pathways
QuickGOQ6IEE8
Ontology : AmiGOATP binding  integral component of membrane  
Ontology : EGO-EBIATP binding  integral component of membrane  
NDEx NetworkSLFN12L
Atlas of Cancer Signalling NetworkSLFN12L
Wikipedia pathwaysSLFN12L
Orthology - Evolution
OrthoDB100506736
Phylogenetic Trees/Animal Genes : TreeFamSLFN12L
HOVERGENQ6IEE8
HOGENOMQ6IEE8
Homologs : HomoloGeneSLFN12L
Homology/Alignments : Family Browser (UCSC)SLFN12L
Gene fusions - Rearrangements
Tumor Fusion PortalSLFN12L
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLFN12L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLFN12L
dbVarSLFN12L
ClinVarSLFN12L
1000_GenomesSLFN12L 
Exome Variant ServerSLFN12L
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP100506736
Genomic Variants (DGV)SLFN12L [DGVbeta]
DECIPHERSLFN12L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLFN12L 
Mutations
ICGC Data PortalSLFN12L 
TCGA Data PortalSLFN12L 
Broad Tumor PortalSLFN12L
OASIS PortalSLFN12L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLFN12L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLFN12L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLFN12L
DgiDB (Drug Gene Interaction Database)SLFN12L
DoCM (Curated mutations)SLFN12L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLFN12L (select a term)
intoGenSLFN12L
Cancer3DSLFN12L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614956   
Orphanet
DisGeNETSLFN12L
MedgenSLFN12L
Genetic Testing Registry SLFN12L
NextProtQ6IEE8 [Medical]
TSGene100506736
GENETestsSLFN12L
Target ValidationSLFN12L
Huge Navigator SLFN12L [HugePedia]
snp3D : Map Gene to Disease100506736
BioCentury BCIQSLFN12L
ClinGenSLFN12L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100506736
Chemical/Pharm GKB GenePA162403886
Clinical trialSLFN12L
Miscellaneous
canSAR (ICR)SLFN12L (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLFN12L
EVEXSLFN12L
GoPubMedSLFN12L
iHOPSLFN12L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:36:50 CET 2017

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