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SLFN13 (schlafen family member 13)

Identity

Alias_symbol (synonym)FLJ31952
Other aliasSLFN10
HGNC (Hugo) SLFN13
LocusID (NCBI) 146857
Atlas_Id 73512
Location 17q12  [Link to chromosome band 17q12]
Location_base_pair Starts at 35435096 and ends at 35448837 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLFN13   26481
Cards
Entrez_Gene (NCBI)SLFN13  146857  schlafen family member 13
AliasesSLFN10
GeneCards (Weizmann)SLFN13
Ensembl hg19 (Hinxton)ENSG00000154760 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000154760 [Gene_View]  chr17:35435096-35448837 [Contig_View]  SLFN13 [Vega]
ICGC DataPortalENSG00000154760
TCGA cBioPortalSLFN13
AceView (NCBI)SLFN13
Genatlas (Paris)SLFN13
WikiGenes146857
SOURCE (Princeton)SLFN13
Genetics Home Reference (NIH)SLFN13
Genomic and cartography
GoldenPath hg38 (UCSC)SLFN13  -     chr17:35435096-35448837 -  17q12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLFN13  -     17q12   [Description]    (hg19-Feb_2009)
EnsemblSLFN13 - 17q12 [CytoView hg19]  SLFN13 - 17q12 [CytoView hg38]
Mapping of homologs : NCBISLFN13 [Mapview hg19]  SLFN13 [Mapview hg38]
OMIM614957   
Gene and transcription
Genbank (Entrez)AK056514 AK074465 AK122750 AK126184 AK127728
RefSeq transcript (Entrez)NM_144682
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLFN13
Cluster EST : UnigeneHs.462833 [ NCBI ]
CGAP (NCI)Hs.462833
Alternative Splicing GalleryENSG00000154760
Gene ExpressionSLFN13 [ NCBI-GEO ]   SLFN13 [ EBI - ARRAY_EXPRESS ]   SLFN13 [ SEEK ]   SLFN13 [ MEM ]
Gene Expression Viewer (FireBrowse)SLFN13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)146857
GTEX Portal (Tissue expression)SLFN13
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ68D06   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ68D06  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ68D06
Splice isoforms : SwissVarQ68D06
PhosPhoSitePlusQ68D06
Domains : Interpro (EBI)DUF2075    P-loop_NTPase    Schlafen    Schlafen_AAA_dom    SLFN13   
Domain families : Pfam (Sanger)AlbA_2 (PF04326)    DUF2075 (PF09848)   
Domain families : Pfam (NCBI)pfam04326    pfam09848   
Conserved Domain (NCBI)SLFN13
DMDM Disease mutations146857
Blocks (Seattle)SLFN13
SuperfamilyQ68D06
Human Protein AtlasENSG00000154760
Peptide AtlasQ68D06
HPRD08716
IPIIPI00470806   IPI00477650   IPI00978246   IPI00979639   IPI00980935   
Protein Interaction databases
DIP (DOE-UCLA)Q68D06
IntAct (EBI)Q68D06
FunCoupENSG00000154760
BioGRIDSLFN13
STRING (EMBL)SLFN13
ZODIACSLFN13
Ontologies - Pathways
QuickGOQ68D06
Ontology : AmiGOATP binding  intracellular  
Ontology : EGO-EBIATP binding  intracellular  
NDEx NetworkSLFN13
Atlas of Cancer Signalling NetworkSLFN13
Wikipedia pathwaysSLFN13
Orthology - Evolution
OrthoDB146857
GeneTree (enSembl)ENSG00000154760
Phylogenetic Trees/Animal Genes : TreeFamSLFN13
HOVERGENQ68D06
HOGENOMQ68D06
Homologs : HomoloGeneSLFN13
Homology/Alignments : Family Browser (UCSC)SLFN13
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLFN13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLFN13
dbVarSLFN13
ClinVarSLFN13
1000_GenomesSLFN13 
Exome Variant ServerSLFN13
ExAC (Exome Aggregation Consortium)SLFN13 (select the gene name)
Genetic variants : HAPMAP146857
Genomic Variants (DGV)SLFN13 [DGVbeta]
DECIPHERSLFN13 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLFN13 
Mutations
ICGC Data PortalSLFN13 
TCGA Data PortalSLFN13 
Broad Tumor PortalSLFN13
OASIS PortalSLFN13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLFN13  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLFN13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLFN13
DgiDB (Drug Gene Interaction Database)SLFN13
DoCM (Curated mutations)SLFN13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLFN13 (select a term)
intoGenSLFN13
Cancer3DSLFN13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614957   
Orphanet
MedgenSLFN13
Genetic Testing Registry SLFN13
NextProtQ68D06 [Medical]
TSGene146857
GENETestsSLFN13
Target ValidationSLFN13
Huge Navigator SLFN13 [HugePedia]
snp3D : Map Gene to Disease146857
BioCentury BCIQSLFN13
ClinGenSLFN13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD146857
Chemical/Pharm GKB GenePA144596360
Clinical trialSLFN13
Miscellaneous
canSAR (ICR)SLFN13 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLFN13
EVEXSLFN13
GoPubMedSLFN13
iHOPSLFN13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:39:07 CEST 2017

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