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SLFN5 (schlafen family member 5)

Identity

Alias_symbol (synonym)MGC19764
Other alias-
HGNC (Hugo) SLFN5
LocusID (NCBI) 162394
Atlas_Id 52062
Location 17q12  [Link to chromosome band 17q12]
Location_base_pair Starts at 35243036 and ends at 35273654 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLFN5   28286
Cards
Entrez_Gene (NCBI)SLFN5  162394  schlafen family member 5
Aliases
GeneCards (Weizmann)SLFN5
Ensembl hg19 (Hinxton)ENSG00000166750 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166750 [Gene_View]  chr17:35243036-35273654 [Contig_View]  SLFN5 [Vega]
ICGC DataPortalENSG00000166750
TCGA cBioPortalSLFN5
AceView (NCBI)SLFN5
Genatlas (Paris)SLFN5
WikiGenes162394
SOURCE (Princeton)SLFN5
Genetics Home Reference (NIH)SLFN5
Genomic and cartography
GoldenPath hg38 (UCSC)SLFN5  -     chr17:35243036-35273654 +  17q12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLFN5  -     17q12   [Description]    (hg19-Feb_2009)
EnsemblSLFN5 - 17q12 [CytoView hg19]  SLFN5 - 17q12 [CytoView hg38]
Mapping of homologs : NCBISLFN5 [Mapview hg19]  SLFN5 [Mapview hg38]
OMIM614952   
Gene and transcription
Genbank (Entrez)AK054668 AK075116 AK303299 AK303632 AL832814
RefSeq transcript (Entrez)NM_001330183 NM_144975
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLFN5
Cluster EST : UnigeneHs.709347 [ NCBI ]
CGAP (NCI)Hs.709347
Alternative Splicing GalleryENSG00000166750
Gene ExpressionSLFN5 [ NCBI-GEO ]   SLFN5 [ EBI - ARRAY_EXPRESS ]   SLFN5 [ SEEK ]   SLFN5 [ MEM ]
Gene Expression Viewer (FireBrowse)SLFN5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)162394
GTEX Portal (Tissue expression)SLFN5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ08AF3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ08AF3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ08AF3
Splice isoforms : SwissVarQ08AF3
PhosPhoSitePlusQ08AF3
Domains : Interpro (EBI)DUF2075    P-loop_NTPase    Schlafen    Schlafen_AAA_dom    Slfn5   
Domain families : Pfam (Sanger)AlbA_2 (PF04326)    DUF2075 (PF09848)   
Domain families : Pfam (NCBI)pfam04326    pfam09848   
Conserved Domain (NCBI)SLFN5
DMDM Disease mutations162394
Blocks (Seattle)SLFN5
SuperfamilyQ08AF3
Human Protein AtlasENSG00000166750
Peptide AtlasQ08AF3
HPRD17519
IPIIPI00433279   IPI00844250   
Protein Interaction databases
DIP (DOE-UCLA)Q08AF3
IntAct (EBI)Q08AF3
FunCoupENSG00000166750
BioGRIDSLFN5
STRING (EMBL)SLFN5
ZODIACSLFN5
Ontologies - Pathways
QuickGOQ08AF3
Ontology : AmiGOATP binding  nucleus  cell differentiation  
Ontology : EGO-EBIATP binding  nucleus  cell differentiation  
NDEx NetworkSLFN5
Atlas of Cancer Signalling NetworkSLFN5
Wikipedia pathwaysSLFN5
Orthology - Evolution
OrthoDB162394
GeneTree (enSembl)ENSG00000166750
Phylogenetic Trees/Animal Genes : TreeFamSLFN5
HOVERGENQ08AF3
HOGENOMQ08AF3
Homologs : HomoloGeneSLFN5
Homology/Alignments : Family Browser (UCSC)SLFN5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLFN5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLFN5
dbVarSLFN5
ClinVarSLFN5
1000_GenomesSLFN5 
Exome Variant ServerSLFN5
ExAC (Exome Aggregation Consortium)SLFN5 (select the gene name)
Genetic variants : HAPMAP162394
Genomic Variants (DGV)SLFN5 [DGVbeta]
DECIPHERSLFN5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLFN5 
Mutations
ICGC Data PortalSLFN5 
TCGA Data PortalSLFN5 
Broad Tumor PortalSLFN5
OASIS PortalSLFN5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLFN5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLFN5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLFN5
DgiDB (Drug Gene Interaction Database)SLFN5
DoCM (Curated mutations)SLFN5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLFN5 (select a term)
intoGenSLFN5
Cancer3DSLFN5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614952   
Orphanet
MedgenSLFN5
Genetic Testing Registry SLFN5
NextProtQ08AF3 [Medical]
TSGene162394
GENETestsSLFN5
Target ValidationSLFN5
Huge Navigator SLFN5 [HugePedia]
snp3D : Map Gene to Disease162394
BioCentury BCIQSLFN5
ClinGenSLFN5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD162394
Chemical/Pharm GKB GenePA144596357
Clinical trialSLFN5
Miscellaneous
canSAR (ICR)SLFN5 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLFN5
EVEXSLFN5
GoPubMedSLFN5
iHOPSLFN5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:56:24 CEST 2017

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