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SLFNL1 (schlafen like 1)

Identity

Alias_namesschlafen-like 1
Alias_symbol (synonym)FLJ23878
Other alias-
HGNC (Hugo) SLFNL1
LocusID (NCBI) 200172
Atlas_Id 73514
Location 1p34.2  [Link to chromosome band 1p34]
Location_base_pair Starts at 41015597 and ends at 41021755 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DDRGK1 (20p13) / SLFNL1 (1p34.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLFNL1   26313
Cards
Entrez_Gene (NCBI)SLFNL1  200172  schlafen like 1
Aliases
GeneCards (Weizmann)SLFNL1
Ensembl hg19 (Hinxton)ENSG00000171790 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171790 [Gene_View]  chr1:41015597-41021755 [Contig_View]  SLFNL1 [Vega]
ICGC DataPortalENSG00000171790
TCGA cBioPortalSLFNL1
AceView (NCBI)SLFNL1
Genatlas (Paris)SLFNL1
WikiGenes200172
SOURCE (Princeton)SLFNL1
Genetics Home Reference (NIH)SLFNL1
Genomic and cartography
GoldenPath hg38 (UCSC)SLFNL1  -     chr1:41015597-41021755 -  1p34.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLFNL1  -     1p34.2   [Description]    (hg19-Feb_2009)
EnsemblSLFNL1 - 1p34.2 [CytoView hg19]  SLFNL1 - 1p34.2 [CytoView hg38]
Mapping of homologs : NCBISLFNL1 [Mapview hg19]  SLFNL1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK097609 AK292296 BC022037 BC037879 BC050353
RefSeq transcript (Entrez)NM_001168247 NM_001300859 NM_144990
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLFNL1
Cluster EST : UnigeneHs.194609 [ NCBI ]
CGAP (NCI)Hs.194609
Alternative Splicing GalleryENSG00000171790
Gene ExpressionSLFNL1 [ NCBI-GEO ]   SLFNL1 [ EBI - ARRAY_EXPRESS ]   SLFNL1 [ SEEK ]   SLFNL1 [ MEM ]
Gene Expression Viewer (FireBrowse)SLFNL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)200172
GTEX Portal (Tissue expression)SLFNL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ499Z3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ499Z3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ499Z3
Splice isoforms : SwissVarQ499Z3
PhosPhoSitePlusQ499Z3
Domains : Interpro (EBI)Schlafen    Schlafen_AAA_dom    SLFNL1   
Domain families : Pfam (Sanger)AlbA_2 (PF04326)   
Domain families : Pfam (NCBI)pfam04326   
Conserved Domain (NCBI)SLFNL1
DMDM Disease mutations200172
Blocks (Seattle)SLFNL1
SuperfamilyQ499Z3
Human Protein AtlasENSG00000171790
Peptide AtlasQ499Z3
HPRD08044
IPIIPI00383042   IPI00419184   IPI00477792   IPI00844016   
Protein Interaction databases
DIP (DOE-UCLA)Q499Z3
IntAct (EBI)Q499Z3
FunCoupENSG00000171790
BioGRIDSLFNL1
STRING (EMBL)SLFNL1
ZODIACSLFNL1
Ontologies - Pathways
QuickGOQ499Z3
Ontology : AmiGOATP binding  
Ontology : EGO-EBIATP binding  
NDEx NetworkSLFNL1
Atlas of Cancer Signalling NetworkSLFNL1
Wikipedia pathwaysSLFNL1
Orthology - Evolution
OrthoDB200172
GeneTree (enSembl)ENSG00000171790
Phylogenetic Trees/Animal Genes : TreeFamSLFNL1
HOVERGENQ499Z3
HOGENOMQ499Z3
Homologs : HomoloGeneSLFNL1
Homology/Alignments : Family Browser (UCSC)SLFNL1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLFNL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLFNL1
dbVarSLFNL1
ClinVarSLFNL1
1000_GenomesSLFNL1 
Exome Variant ServerSLFNL1
ExAC (Exome Aggregation Consortium)SLFNL1 (select the gene name)
Genetic variants : HAPMAP200172
Genomic Variants (DGV)SLFNL1 [DGVbeta]
DECIPHERSLFNL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLFNL1 
Mutations
ICGC Data PortalSLFNL1 
TCGA Data PortalSLFNL1 
Broad Tumor PortalSLFNL1
OASIS PortalSLFNL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLFNL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLFNL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLFNL1
DgiDB (Drug Gene Interaction Database)SLFNL1
DoCM (Curated mutations)SLFNL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLFNL1 (select a term)
intoGenSLFNL1
Cancer3DSLFNL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSLFNL1
Genetic Testing Registry SLFNL1
NextProtQ499Z3 [Medical]
TSGene200172
GENETestsSLFNL1
Target ValidationSLFNL1
Huge Navigator SLFNL1 [HugePedia]
snp3D : Map Gene to Disease200172
BioCentury BCIQSLFNL1
ClinGenSLFNL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD200172
Chemical/Pharm GKB GenePA144596362
Clinical trialSLFNL1
Miscellaneous
canSAR (ICR)SLFNL1 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLFNL1
EVEXSLFNL1
GoPubMedSLFNL1
iHOPSLFNL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:41:33 CEST 2017

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