SLIRP (SRA stem-loop interacting RNA binding protein)

2014-11-01  

Identity

HGNC
SLIRP
LOCATION
14q24.3
LOCUSID
81892
ALIAS
C14orf156,DC50,PD04872
FUSION GENES
Show Gene Fusions

Other Information

Locus ID:

NCBI: 81892
MIM: 610211
HGNC: 20495
Ensembl: ENSG00000119705

Variants:

dbSNP: 81892
ClinVar: 81892
TCGA: ENSG00000119705
COSMIC: SLIRP

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000119705ENST00000238688Q9GZT3
ENSG00000119705ENST00000553981H0YJ07
ENSG00000119705ENST00000555890H0YJI1
ENSG00000119705ENST00000556310H0YJW7
ENSG00000119705ENST00000556375H0YJU7
ENSG00000119705ENST00000556831H0YJ40
ENSG00000119705ENST00000557342Q9GZT3
ENSG00000119705ENST00000557431G3V2S9
ENSG00000119705ENST00000557623G3V4X6
ENSG00000119705ENST00000613856A0A087WUN7

Expression (GTEx)

0
5
10
15
20
25
30
35
40
45
50
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

Protein levels (Protein atlas)

Not detected
Low
Medium
High
cerebral cortex
cerebellum
hippocampus
caudate
thyroid gland
parathyroid gland
adrenal gland
nasopharynx
bronchus
lung
oral mucosa
salivary gland
esophagus
stomach 1
stomach 2
duodenum
small intestine
colon
rectum
liver
gallbladder
pancreas
kidney
urinary bladder
testis
epididymis
seminal vesicle
prostate
vagina
ovary
fallopian tube
endometrium 1
endometrium 2
cervix, uterine
placenta
breast
heart muscle
smooth muscle
skeletal muscle
soft tissue 1
soft tissue 2
adipose tissue
skin 1
skin 2
appendix
spleen
lymph node
tonsil
bone marrow

References

Pubmed IDYearTitleCitations
202002222010LRPPRC and SLIRP interact in a ribonucleoprotein complex that regulates posttranscriptional gene expression in mitochondria.102
226615772012LRPPRC/SLIRP suppresses PNPase-mediated mRNA decay and promotes polyadenylation in human mitochondria.66
196805432009A computational screen for regulators of oxidative phosphorylation implicates SLIRP in mitochondrial RNA homeostasis.65
167628382006SLIRP, a small SRA binding protein, is a nuclear receptor corepressor.55
291469082017LRPPRC-mediated folding of the mitochondrial transcriptome.18
208776242010Genetic variants in nuclear-encoded mitochondrial genes influence AIDS progression.17
273533302016SLIRP stabilizes LRPPRC via an RRM-PPR protein interface.10
288594752017Identification of SLIRP as a G Quadruplex-Binding Protein.6
268662712016Affinity purification-mass spectrometry analysis of bcl-2 interactome identified SLIRP as a novel interacting protein.3

Citation

Dessen P

SLIRP (SRA stem-loop interacting RNA binding protein)

Atlas Genet Cytogenet Oncol Haematol. 2014-11-01

Online version: http://atlasgeneticsoncology.org/gene/73516/slirp