Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLIT2-IT1 (SLIT2 intronic transcript 1)

Identity

Alias (NCBI)-
HGNC (Hugo) SLIT2-IT1
HGNC Previous nameSLIT2 intronic transcript 1 (non-protein coding)
LocusID (NCBI) 100505893
Atlas_Id 73518
Location 4p15.31  [Link to chromosome band 4p15]
Location_base_pair Starts at 20392189 and ends at 20394856 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLIT2-IT1   41383
Cards
Entrez_Gene (NCBI)SLIT2-IT1  100505893  SLIT2 intronic transcript 1
Aliases
GeneCards (Weizmann)SLIT2-IT1
Ensembl hg19 (Hinxton)ENSG00000248228 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000248228 [Gene_View]  ENSG00000248228 [Sequence]  chr4:20392189-20394856 [Contig_View]  SLIT2-IT1 [Vega]
ICGC DataPortalENSG00000248228
TCGA cBioPortalSLIT2-IT1
AceView (NCBI)SLIT2-IT1
Genatlas (Paris)SLIT2-IT1
WikiGenes100505893
SOURCE (Princeton)SLIT2-IT1
Genetics Home Reference (NIH)SLIT2-IT1
Genomic and cartography
GoldenPath hg38 (UCSC)SLIT2-IT1  -     chr4:20392189-20394856 +  4p15.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLIT2-IT1  -     4p15.31   [Description]    (hg19-Feb_2009)
GoldenPathSLIT2-IT1 - 4p15.31 [CytoView hg19]  SLIT2-IT1 - 4p15.31 [CytoView hg38]
ImmunoBaseENSG00000248228
genome Data Viewer NCBISLIT2-IT1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BC041440 BI831389 BX089083
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLIT2-IT1
Alternative Splicing GalleryENSG00000248228
Gene ExpressionSLIT2-IT1 [ NCBI-GEO ]   SLIT2-IT1 [ EBI - ARRAY_EXPRESS ]   SLIT2-IT1 [ SEEK ]   SLIT2-IT1 [ MEM ]
Gene Expression Viewer (FireBrowse)SLIT2-IT1 [ Firebrowse - Broad ]
GenevisibleExpression of SLIT2-IT1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100505893
GTEX Portal (Tissue expression)SLIT2-IT1
Human Protein AtlasENSG00000248228-SLIT2-IT1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SLIT2-IT1
DMDM Disease mutations100505893
Blocks (Seattle)SLIT2-IT1
Human Protein Atlas [tissue]ENSG00000248228-SLIT2-IT1 [tissue]
Protein Interaction databases
FunCoupENSG00000248228
BioGRIDSLIT2-IT1
STRING (EMBL)SLIT2-IT1
ZODIACSLIT2-IT1
Ontologies - Pathways
Huge Navigator SLIT2-IT1 [HugePedia]
snp3D : Map Gene to Disease100505893
BioCentury BCIQSLIT2-IT1
ClinGenSLIT2-IT1
Clinical trials, drugs, therapy
Protein Interactions : CTD100505893
Clinical trialSLIT2-IT1
Miscellaneous
canSAR (ICR)SLIT2-IT1 (select the gene name)
HarmonizomeSLIT2-IT1
DataMed IndexSLIT2-IT1
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLIT2-IT1
EVEXSLIT2-IT1
GoPubMedSLIT2-IT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Aug 22 19:34:51 CEST 2020

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