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SLITRK2 (SLIT and NTRK like family member 2)

Identity

Alias_namesSLITL1
slit-like 1 (Drosophila)
SLIT and NTRK-like family, member 2
Alias_symbol (synonym)KIAA1854
CXorf2
Other alias
HGNC (Hugo) SLITRK2
LocusID (NCBI) 84631
Atlas_Id 73520
Location Xq27.3  [Link to chromosome band Xq27]
Location_base_pair Starts at 145817829 and ends at 145825842 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SLITRK2 (Xq27.3) / SLITRK2 (Xq27.3)SRSF5 (14q24.2) / SLITRK2 (Xq27.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLITRK2   13449
Cards
Entrez_Gene (NCBI)SLITRK2  84631  SLIT and NTRK like family member 2
AliasesCXorf2; SLITL1
GeneCards (Weizmann)SLITRK2
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chrX:145817829-145825842 [Contig_View]  SLITRK2 [Vega]
TCGA cBioPortalSLITRK2
AceView (NCBI)SLITRK2
Genatlas (Paris)SLITRK2
WikiGenes84631
SOURCE (Princeton)SLITRK2
Genetics Home Reference (NIH)SLITRK2
Genomic and cartography
GoldenPath hg38 (UCSC)SLITRK2  -     chrX:145817829-145825842 +  Xq27.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLITRK2  -     Xq27.3   [Description]    (hg19-Feb_2009)
EnsemblSLITRK2 - Xq27.3 [CytoView hg19]  SLITRK2 - Xq27.3 [CytoView hg38]
Mapping of homologs : NCBISLITRK2 [Mapview hg19]  SLITRK2 [Mapview hg38]
OMIM300561   
Gene and transcription
Genbank (Entrez)AB058757 AK091015 AK096278 AK289732 BC113011
RefSeq transcript (Entrez)NM_001144003 NM_001144004 NM_001144005 NM_001144006 NM_001144007 NM_001144008 NM_001144009 NM_001144010 NM_032539
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLITRK2
Cluster EST : UnigeneHs.320368 [ NCBI ]
CGAP (NCI)Hs.320368
Gene ExpressionSLITRK2 [ NCBI-GEO ]   SLITRK2 [ EBI - ARRAY_EXPRESS ]   SLITRK2 [ SEEK ]   SLITRK2 [ MEM ]
Gene Expression Viewer (FireBrowse)SLITRK2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84631
GTEX Portal (Tissue expression)SLITRK2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H156   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H156  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H156
Splice isoforms : SwissVarQ9H156
PhosPhoSitePlusQ9H156
Domaine pattern : Prosite (Expaxy)LRR (PS51450)   
Domains : Interpro (EBI)Cys-rich_flank_reg_C    L_dom-like    Leu-rich_rpt    Leu-rich_rpt_typical-subtyp    LRRNT   
Domain families : Pfam (Sanger)LRR_8 (PF13855)   
Domain families : Pfam (NCBI)pfam13855   
Domain families : Smart (EMBL)LRR_TYP (SM00369)  LRRCT (SM00082)  LRRNT (SM00013)  
Conserved Domain (NCBI)SLITRK2
DMDM Disease mutations84631
Blocks (Seattle)SLITRK2
SuperfamilyQ9H156
Peptide AtlasQ9H156
HPRD06603
IPIIPI00176104   IPI00410358   
Protein Interaction databases
DIP (DOE-UCLA)Q9H156
IntAct (EBI)Q9H156
BioGRIDSLITRK2
STRING (EMBL)SLITRK2
ZODIACSLITRK2
Ontologies - Pathways
QuickGOQ9H156
Ontology : AmiGOplasma membrane  axonogenesis  integral component of membrane  positive regulation of synapse assembly  
Ontology : EGO-EBIplasma membrane  axonogenesis  integral component of membrane  positive regulation of synapse assembly  
NDEx NetworkSLITRK2
Atlas of Cancer Signalling NetworkSLITRK2
Wikipedia pathwaysSLITRK2
Orthology - Evolution
OrthoDB84631
Phylogenetic Trees/Animal Genes : TreeFamSLITRK2
HOVERGENQ9H156
HOGENOMQ9H156
Homologs : HomoloGeneSLITRK2
Homology/Alignments : Family Browser (UCSC)SLITRK2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLITRK2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLITRK2
dbVarSLITRK2
ClinVarSLITRK2
1000_GenomesSLITRK2 
Exome Variant ServerSLITRK2
ExAC (Exome Aggregation Consortium)SLITRK2 (select the gene name)
Genetic variants : HAPMAP84631
Genomic Variants (DGV)SLITRK2 [DGVbeta]
DECIPHERSLITRK2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLITRK2 
Mutations
ICGC Data PortalSLITRK2 
TCGA Data PortalSLITRK2 
Broad Tumor PortalSLITRK2
OASIS PortalSLITRK2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLITRK2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLITRK2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch SLITRK2
DgiDB (Drug Gene Interaction Database)SLITRK2
DoCM (Curated mutations)SLITRK2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLITRK2 (select a term)
intoGenSLITRK2
Cancer3DSLITRK2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300561   
Orphanet
MedgenSLITRK2
Genetic Testing Registry SLITRK2
NextProtQ9H156 [Medical]
TSGene84631
GENETestsSLITRK2
Target ValidationSLITRK2
Huge Navigator SLITRK2 [HugePedia]
snp3D : Map Gene to Disease84631
BioCentury BCIQSLITRK2
ClinGenSLITRK2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84631
Chemical/Pharm GKB GenePA134968225
Clinical trialSLITRK2
Miscellaneous
canSAR (ICR)SLITRK2 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLITRK2
EVEXSLITRK2
GoPubMedSLITRK2
iHOPSLITRK2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:41:34 CEST 2017

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