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SLITRK3 (SLIT and NTRK like family member 3)

Identity

Alias_namesSLIT and NTRK-like family
Alias_symbol (synonym)KIAA0848
Other alias-
HGNC (Hugo) SLITRK3
LocusID (NCBI) 22865
Atlas_Id 55688
Location 3q26.1  [Link to chromosome band 3q26]
Location_base_pair Starts at 165186720 and ends at 165196002 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLITRK3   23501
Cards
Entrez_Gene (NCBI)SLITRK3  22865  SLIT and NTRK like family member 3
Aliases
GeneCards (Weizmann)SLITRK3
Ensembl hg19 (Hinxton)ENSG00000121871 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000121871 [Gene_View]  chr3:165186720-165196002 [Contig_View]  SLITRK3 [Vega]
ICGC DataPortalENSG00000121871
TCGA cBioPortalSLITRK3
AceView (NCBI)SLITRK3
Genatlas (Paris)SLITRK3
WikiGenes22865
SOURCE (Princeton)SLITRK3
Genetics Home Reference (NIH)SLITRK3
Genomic and cartography
GoldenPath hg38 (UCSC)SLITRK3  -     chr3:165186720-165196002 -  3q26.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLITRK3  -     3q26.1   [Description]    (hg19-Feb_2009)
EnsemblSLITRK3 - 3q26.1 [CytoView hg19]  SLITRK3 - 3q26.1 [CytoView hg38]
Mapping of homologs : NCBISLITRK3 [Mapview hg19]  SLITRK3 [Mapview hg38]
OMIM609679   
Gene and transcription
Genbank (Entrez)AB020655 AK290024 BC040491 BC114621 DA123399
RefSeq transcript (Entrez)NM_001318810 NM_001318811 NM_014926
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLITRK3
Cluster EST : UnigeneHs.101745 [ NCBI ]
CGAP (NCI)Hs.101745
Alternative Splicing GalleryENSG00000121871
Gene ExpressionSLITRK3 [ NCBI-GEO ]   SLITRK3 [ EBI - ARRAY_EXPRESS ]   SLITRK3 [ SEEK ]   SLITRK3 [ MEM ]
Gene Expression Viewer (FireBrowse)SLITRK3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)22865
GTEX Portal (Tissue expression)SLITRK3
Protein : pattern, domain, 3D structure
UniProt/SwissProtO94933   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO94933  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO94933
Splice isoforms : SwissVarO94933
PhosPhoSitePlusO94933
Domains : Interpro (EBI)Cys-rich_flank_reg_C    L_dom-like    Leu-rich_rpt    Leu-rich_rpt_typical-subtyp   
Domain families : Pfam (Sanger)LRR_8 (PF13855)   
Domain families : Pfam (NCBI)pfam13855   
Domain families : Smart (EMBL)LRR_TYP (SM00369)  LRRCT (SM00082)  
Conserved Domain (NCBI)SLITRK3
DMDM Disease mutations22865
Blocks (Seattle)SLITRK3
SuperfamilyO94933
Human Protein AtlasENSG00000121871
Peptide AtlasO94933
HPRD18064
IPIIPI00016467   IPI00945545   
Protein Interaction databases
DIP (DOE-UCLA)O94933
IntAct (EBI)O94933
FunCoupENSG00000121871
BioGRIDSLITRK3
STRING (EMBL)SLITRK3
ZODIACSLITRK3
Ontologies - Pathways
QuickGOO94933
Ontology : AmiGOaxonogenesis  integral component of membrane  positive regulation of synapse assembly  
Ontology : EGO-EBIaxonogenesis  integral component of membrane  positive regulation of synapse assembly  
NDEx NetworkSLITRK3
Atlas of Cancer Signalling NetworkSLITRK3
Wikipedia pathwaysSLITRK3
Orthology - Evolution
OrthoDB22865
GeneTree (enSembl)ENSG00000121871
Phylogenetic Trees/Animal Genes : TreeFamSLITRK3
HOVERGENO94933
HOGENOMO94933
Homologs : HomoloGeneSLITRK3
Homology/Alignments : Family Browser (UCSC)SLITRK3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLITRK3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLITRK3
dbVarSLITRK3
ClinVarSLITRK3
1000_GenomesSLITRK3 
Exome Variant ServerSLITRK3
ExAC (Exome Aggregation Consortium)SLITRK3 (select the gene name)
Genetic variants : HAPMAP22865
Genomic Variants (DGV)SLITRK3 [DGVbeta]
DECIPHERSLITRK3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLITRK3 
Mutations
ICGC Data PortalSLITRK3 
TCGA Data PortalSLITRK3 
Broad Tumor PortalSLITRK3
OASIS PortalSLITRK3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLITRK3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLITRK3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLITRK3
DgiDB (Drug Gene Interaction Database)SLITRK3
DoCM (Curated mutations)SLITRK3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLITRK3 (select a term)
intoGenSLITRK3
Cancer3DSLITRK3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609679   
Orphanet
MedgenSLITRK3
Genetic Testing Registry SLITRK3
NextProtO94933 [Medical]
TSGene22865
GENETestsSLITRK3
Target ValidationSLITRK3
Huge Navigator SLITRK3 [HugePedia]
snp3D : Map Gene to Disease22865
BioCentury BCIQSLITRK3
ClinGenSLITRK3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD22865
Chemical/Pharm GKB GenePA134958002
Clinical trialSLITRK3
Miscellaneous
canSAR (ICR)SLITRK3 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLITRK3
EVEXSLITRK3
GoPubMedSLITRK3
iHOPSLITRK3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:56:24 CEST 2017

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