Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SLITRK4 (SLIT and NTRK-like family, member 4)

Identity

Alias_namesSLIT and NTRK-like family, member 4
Alias_symbol (synonym)DKFZp547M2010
Other alias-
HGNC (Hugo) SLITRK4
LocusID (NCBI) 139065
Atlas_Id 73522
Location Xq27.3  [Link to chromosome band Xq27]
Location_base_pair Starts at 142710595 and ends at 142723926 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
KMT5B (11q13.2) / SLITRK4 (Xq27.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLITRK4   23502
Cards
Entrez_Gene (NCBI)SLITRK4  139065  SLIT and NTRK-like family, member 4
Aliases
GeneCards (Weizmann)SLITRK4
Ensembl hg19 (Hinxton)ENSG00000179542 [Gene_View]  chrX:142710595-142723926 [Contig_View]  SLITRK4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000179542 [Gene_View]  chrX:142710595-142723926 [Contig_View]  SLITRK4 [Vega]
ICGC DataPortalENSG00000179542
TCGA cBioPortalSLITRK4
AceView (NCBI)SLITRK4
Genatlas (Paris)SLITRK4
WikiGenes139065
SOURCE (Princeton)SLITRK4
Genetics Home Reference (NIH)SLITRK4
Genomic and cartography
GoldenPath hg19 (UCSC)SLITRK4  -     chrX:142710595-142723926 -  Xq27.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SLITRK4  -     Xq27.3   [Description]    (hg38-Dec_2013)
EnsemblSLITRK4 - Xq27.3 [CytoView hg19]  SLITRK4 - Xq27.3 [CytoView hg38]
Mapping of homologs : NCBISLITRK4 [Mapview hg19]  SLITRK4 [Mapview hg38]
OMIM300562   
Gene and transcription
Genbank (Entrez)AI286228 AK057619 AK092016 AK315044 AL713693
RefSeq transcript (Entrez)NM_001184749 NM_001184750 NM_173078
RefSeq genomic (Entrez)NC_000023 NC_018934 NG_021344 NT_011786 NW_004929446
Consensus coding sequences : CCDS (NCBI)SLITRK4
Cluster EST : UnigeneHs.272284 [ NCBI ]
CGAP (NCI)Hs.272284
Alternative Splicing GalleryENSG00000179542
Gene ExpressionSLITRK4 [ NCBI-GEO ]   SLITRK4 [ EBI - ARRAY_EXPRESS ]   SLITRK4 [ SEEK ]   SLITRK4 [ MEM ]
Gene Expression Viewer (FireBrowse)SLITRK4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)139065
GTEX Portal (Tissue expression)SLITRK4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IW52   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IW52  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IW52
Splice isoforms : SwissVarQ8IW52
PhosPhoSitePlusQ8IW52
Domaine pattern : Prosite (Expaxy)LRR (PS51450)   
Domains : Interpro (EBI)Cys-rich_flank_reg_C    Leu-rich_rpt    Leu-rich_rpt_typical-subtyp    LRR-contain_N   
Domain families : Pfam (Sanger)LRR_8 (PF13855)   
Domain families : Pfam (NCBI)pfam13855   
Domain families : Smart (EMBL)LRR_TYP (SM00369)  LRRCT (SM00082)  LRRNT (SM00013)  
Conserved Domain (NCBI)SLITRK4
DMDM Disease mutations139065
Blocks (Seattle)SLITRK4
SuperfamilyQ8IW52
Human Protein AtlasENSG00000179542
Peptide AtlasQ8IW52
HPRD06486
IPIIPI00217146   
Protein Interaction databases
DIP (DOE-UCLA)Q8IW52
IntAct (EBI)Q8IW52
FunCoupENSG00000179542
BioGRIDSLITRK4
STRING (EMBL)SLITRK4
ZODIACSLITRK4
Ontologies - Pathways
QuickGOQ8IW52
Ontology : AmiGOaxonogenesis  integral component of membrane  
Ontology : EGO-EBIaxonogenesis  integral component of membrane  
NDEx NetworkSLITRK4
Atlas of Cancer Signalling NetworkSLITRK4
Wikipedia pathwaysSLITRK4
Orthology - Evolution
OrthoDB139065
GeneTree (enSembl)ENSG00000179542
Phylogenetic Trees/Animal Genes : TreeFamSLITRK4
HOVERGENQ8IW52
HOGENOMQ8IW52
Homologs : HomoloGeneSLITRK4
Homology/Alignments : Family Browser (UCSC)SLITRK4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLITRK4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLITRK4
dbVarSLITRK4
ClinVarSLITRK4
1000_GenomesSLITRK4 
Exome Variant ServerSLITRK4
ExAC (Exome Aggregation Consortium)SLITRK4 (select the gene name)
Genetic variants : HAPMAP139065
Genomic Variants (DGV)SLITRK4 [DGVbeta]
DECIPHER (Syndromes)X:142710595-142723926  ENSG00000179542
CONAN: Copy Number AnalysisSLITRK4 
Mutations
ICGC Data PortalSLITRK4 
TCGA Data PortalSLITRK4 
Broad Tumor PortalSLITRK4
OASIS PortalSLITRK4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLITRK4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLITRK4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch SLITRK4
DgiDB (Drug Gene Interaction Database)SLITRK4
DoCM (Curated mutations)SLITRK4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLITRK4 (select a term)
intoGenSLITRK4
Cancer3DSLITRK4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300562   
Orphanet
MedgenSLITRK4
Genetic Testing Registry SLITRK4
NextProtQ8IW52 [Medical]
TSGene139065
GENETestsSLITRK4
Huge Navigator SLITRK4 [HugePedia]
snp3D : Map Gene to Disease139065
BioCentury BCIQSLITRK4
ClinGenSLITRK4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD139065
Chemical/Pharm GKB GenePA134926932
Clinical trialSLITRK4
Miscellaneous
canSAR (ICR)SLITRK4 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLITRK4
EVEXSLITRK4
GoPubMedSLITRK4
iHOPSLITRK4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:44:02 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.