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SLITRK5 (SLIT and NTRK like family member 5)

Identity

Alias_namesLRRC11
leucine rich repeat containing 11
SLIT and NTRK-like family, member 5
Alias_symbol (synonym)bA364G4.2
KIAA0918
Other alias
HGNC (Hugo) SLITRK5
LocusID (NCBI) 26050
Atlas_Id 73523
Location 13q31.2  [Link to chromosome band 13q31]
Location_base_pair Starts at 87672615 and ends at 87679615 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLITRK5   20295
Cards
Entrez_Gene (NCBI)SLITRK5  26050  SLIT and NTRK like family member 5
AliasesLRRC11; bA364G4.2
GeneCards (Weizmann)SLITRK5
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr13:87672615-87679615 [Contig_View]  SLITRK5 [Vega]
TCGA cBioPortalSLITRK5
AceView (NCBI)SLITRK5
Genatlas (Paris)SLITRK5
WikiGenes26050
SOURCE (Princeton)SLITRK5
Genetics Home Reference (NIH)SLITRK5
Genomic and cartography
GoldenPath hg38 (UCSC)SLITRK5  -     chr13:87672615-87679615 +  13q31.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLITRK5  -     13q31.2   [Description]    (hg19-Feb_2009)
EnsemblSLITRK5 - 13q31.2 [CytoView hg19]  SLITRK5 - 13q31.2 [CytoView hg38]
Mapping of homologs : NCBISLITRK5 [Mapview hg19]  SLITRK5 [Mapview hg38]
OMIM609680   
Gene and transcription
Genbank (Entrez)AB020725 AK024251 AK299744 AW449813 BC098106
RefSeq transcript (Entrez)NM_015567
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLITRK5
Cluster EST : UnigeneHs.591208 [ NCBI ]
CGAP (NCI)Hs.591208
Gene ExpressionSLITRK5 [ NCBI-GEO ]   SLITRK5 [ EBI - ARRAY_EXPRESS ]   SLITRK5 [ SEEK ]   SLITRK5 [ MEM ]
Gene Expression Viewer (FireBrowse)SLITRK5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26050
GTEX Portal (Tissue expression)SLITRK5
Protein : pattern, domain, 3D structure
UniProt/SwissProtO94991   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO94991  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO94991
Splice isoforms : SwissVarO94991
PhosPhoSitePlusO94991
Domaine pattern : Prosite (Expaxy)LRR (PS51450)   
Domains : Interpro (EBI)Cys-rich_flank_reg_C    L_dom-like    Leu-rich_rpt    Leu-rich_rpt_typical-subtyp   
Domain families : Pfam (Sanger)LRR_8 (PF13855)   
Domain families : Pfam (NCBI)pfam13855   
Domain families : Smart (EMBL)LRR_TYP (SM00369)  LRRCT (SM00082)  
Conserved Domain (NCBI)SLITRK5
DMDM Disease mutations26050
Blocks (Seattle)SLITRK5
SuperfamilyO94991
Peptide AtlasO94991
HPRD18065
IPIIPI00016679   IPI01010547   
Protein Interaction databases
DIP (DOE-UCLA)O94991
IntAct (EBI)O94991
BioGRIDSLITRK5
STRING (EMBL)SLITRK5
ZODIACSLITRK5
Ontologies - Pathways
QuickGOO94991
Ontology : AmiGOchemical synaptic transmission  axonogenesis  grooming behavior  response to xenobiotic stimulus  integral component of membrane  striatum development  adult behavior  receptor complex  skin development  dendrite morphogenesis  positive regulation of synapse assembly  cardiovascular system development  
Ontology : EGO-EBIchemical synaptic transmission  axonogenesis  grooming behavior  response to xenobiotic stimulus  integral component of membrane  striatum development  adult behavior  receptor complex  skin development  dendrite morphogenesis  positive regulation of synapse assembly  cardiovascular system development  
NDEx NetworkSLITRK5
Atlas of Cancer Signalling NetworkSLITRK5
Wikipedia pathwaysSLITRK5
Orthology - Evolution
OrthoDB26050
Phylogenetic Trees/Animal Genes : TreeFamSLITRK5
HOVERGENO94991
HOGENOMO94991
Homologs : HomoloGeneSLITRK5
Homology/Alignments : Family Browser (UCSC)SLITRK5
Gene fusions - Rearrangements
Fusion: Tumor Portal SLITRK5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLITRK5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLITRK5
dbVarSLITRK5
ClinVarSLITRK5
1000_GenomesSLITRK5 
Exome Variant ServerSLITRK5
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP26050
Genomic Variants (DGV)SLITRK5 [DGVbeta]
DECIPHERSLITRK5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLITRK5 
Mutations
ICGC Data PortalSLITRK5 
TCGA Data PortalSLITRK5 
Broad Tumor PortalSLITRK5
OASIS PortalSLITRK5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLITRK5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLITRK5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLITRK5
DgiDB (Drug Gene Interaction Database)SLITRK5
DoCM (Curated mutations)SLITRK5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLITRK5 (select a term)
intoGenSLITRK5
Cancer3DSLITRK5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609680   
Orphanet
MedgenSLITRK5
Genetic Testing Registry SLITRK5
NextProtO94991 [Medical]
TSGene26050
GENETestsSLITRK5
Target ValidationSLITRK5
Huge Navigator SLITRK5 [HugePedia]
snp3D : Map Gene to Disease26050
BioCentury BCIQSLITRK5
ClinGenSLITRK5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26050
Chemical/Pharm GKB GenePA134885524
Clinical trialSLITRK5
Miscellaneous
canSAR (ICR)SLITRK5 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLITRK5
EVEXSLITRK5
GoPubMedSLITRK5
iHOPSLITRK5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:27:55 CET 2017

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