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SLITRK6 (SLIT and NTRK-like family, member 6)

Identity

Alias_namesSLIT and NTRK-like family, member 6
Alias_symbol (synonym)FLJ22774
Other aliasDFNMYP
HGNC (Hugo) SLITRK6
LocusID (NCBI) 84189
Atlas_Id 73524
Location 13q31.1  [Link to chromosome band 13q31]
Location_base_pair Starts at 86366922 and ends at 86373483 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLITRK6   23503
Cards
Entrez_Gene (NCBI)SLITRK6  84189  SLIT and NTRK-like family, member 6
AliasesDFNMYP
GeneCards (Weizmann)SLITRK6
Ensembl hg19 (Hinxton)ENSG00000184564 [Gene_View]  chr13:86366922-86373483 [Contig_View]  SLITRK6 [Vega]
Ensembl hg38 (Hinxton)ENSG00000184564 [Gene_View]  chr13:86366922-86373483 [Contig_View]  SLITRK6 [Vega]
ICGC DataPortalENSG00000184564
TCGA cBioPortalSLITRK6
AceView (NCBI)SLITRK6
Genatlas (Paris)SLITRK6
WikiGenes84189
SOURCE (Princeton)SLITRK6
Genetics Home Reference (NIH)SLITRK6
Genomic and cartography
GoldenPath hg19 (UCSC)SLITRK6  -     chr13:86366922-86373483 -  13q31.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SLITRK6  -     13q31.1   [Description]    (hg38-Dec_2013)
EnsemblSLITRK6 - 13q31.1 [CytoView hg19]  SLITRK6 - 13q31.1 [CytoView hg38]
Mapping of homologs : NCBISLITRK6 [Mapview hg19]  SLITRK6 [Mapview hg38]
OMIM221200   609681   
Gene and transcription
Genbank (Entrez)AK021931 AK026427 AK292793 AL137517 AM393568
RefSeq transcript (Entrez)NM_032229
RefSeq genomic (Entrez)NC_000013 NC_018924 NG_041801 NT_024524 NW_004929388
Consensus coding sequences : CCDS (NCBI)SLITRK6
Cluster EST : UnigeneHs.525105 [ NCBI ]
CGAP (NCI)Hs.525105
Alternative Splicing GalleryENSG00000184564
Gene ExpressionSLITRK6 [ NCBI-GEO ]   SLITRK6 [ EBI - ARRAY_EXPRESS ]   SLITRK6 [ SEEK ]   SLITRK6 [ MEM ]
Gene Expression Viewer (FireBrowse)SLITRK6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84189
GTEX Portal (Tissue expression)SLITRK6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H5Y7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H5Y7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H5Y7
Splice isoforms : SwissVarQ9H5Y7
PhosPhoSitePlusQ9H5Y7
Domaine pattern : Prosite (Expaxy)LRR (PS51450)   
Domains : Interpro (EBI)Cys-rich_flank_reg_C    Leu-rich_rpt    Leu-rich_rpt_typical-subtyp   
Domain families : Pfam (Sanger)LRR_8 (PF13855)   
Domain families : Pfam (NCBI)pfam13855   
Domain families : Smart (EMBL)LRR_TYP (SM00369)  LRRCT (SM00082)  
Conserved Domain (NCBI)SLITRK6
DMDM Disease mutations84189
Blocks (Seattle)SLITRK6
SuperfamilyQ9H5Y7
Human Protein AtlasENSG00000184564
Peptide AtlasQ9H5Y7
HPRD15403
IPIIPI00176398   
Protein Interaction databases
DIP (DOE-UCLA)Q9H5Y7
IntAct (EBI)Q9H5Y7
FunCoupENSG00000184564
BioGRIDSLITRK6
STRING (EMBL)SLITRK6
ZODIACSLITRK6
Ontologies - Pathways
QuickGOQ9H5Y7
Ontology : AmiGOstartle response  lens development in camera-type eye  auditory receptor cell morphogenesis  integral component of plasma membrane  axonogenesis  synapse assembly  visual perception  sensory perception of sound  adult locomotory behavior  cell surface  vestibulocochlear nerve development  auditory behavior  multicellular organism growth  linear vestibuloocular reflex  innervation  cochlea development  
Ontology : EGO-EBIstartle response  lens development in camera-type eye  auditory receptor cell morphogenesis  integral component of plasma membrane  axonogenesis  synapse assembly  visual perception  sensory perception of sound  adult locomotory behavior  cell surface  vestibulocochlear nerve development  auditory behavior  multicellular organism growth  linear vestibuloocular reflex  innervation  cochlea development  
NDEx NetworkSLITRK6
Atlas of Cancer Signalling NetworkSLITRK6
Wikipedia pathwaysSLITRK6
Orthology - Evolution
OrthoDB84189
GeneTree (enSembl)ENSG00000184564
Phylogenetic Trees/Animal Genes : TreeFamSLITRK6
HOVERGENQ9H5Y7
HOGENOMQ9H5Y7
Homologs : HomoloGeneSLITRK6
Homology/Alignments : Family Browser (UCSC)SLITRK6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLITRK6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLITRK6
dbVarSLITRK6
ClinVarSLITRK6
1000_GenomesSLITRK6 
Exome Variant ServerSLITRK6
ExAC (Exome Aggregation Consortium)SLITRK6 (select the gene name)
Genetic variants : HAPMAP84189
Genomic Variants (DGV)SLITRK6 [DGVbeta]
DECIPHER (Syndromes)13:86366922-86373483  ENSG00000184564
CONAN: Copy Number AnalysisSLITRK6 
Mutations
ICGC Data PortalSLITRK6 
TCGA Data PortalSLITRK6 
Broad Tumor PortalSLITRK6
OASIS PortalSLITRK6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLITRK6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLITRK6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLITRK6
DgiDB (Drug Gene Interaction Database)SLITRK6
DoCM (Curated mutations)SLITRK6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLITRK6 (select a term)
intoGenSLITRK6
Cancer3DSLITRK6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM221200    609681   
Orphanet22292    12047   
MedgenSLITRK6
Genetic Testing Registry SLITRK6
NextProtQ9H5Y7 [Medical]
TSGene84189
GENETestsSLITRK6
Huge Navigator SLITRK6 [HugePedia]
snp3D : Map Gene to Disease84189
BioCentury BCIQSLITRK6
ClinGenSLITRK6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84189
Chemical/Pharm GKB GenePA134928433
Clinical trialSLITRK6
Miscellaneous
canSAR (ICR)SLITRK6 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLITRK6
EVEXSLITRK6
GoPubMedSLITRK6
iHOPSLITRK6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:44:03 CET 2017

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