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SLMAP (sarcolemma associated protein)

Identity

Alias_symbol (synonym)SLAP
KIAA1601
Other alias
HGNC (Hugo) SLMAP
LocusID (NCBI) 7871
Atlas_Id 73525
Location 3p14.3  [Link to chromosome band 3p14]
Location_base_pair Starts at 57742983 and ends at 57915730 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
BBS2 (16q12.2) / SLMAP (3p14.3)CPSF2 (14q32.12) / SLMAP (3p14.3)FLNB (3p14.3) / SLMAP (3p14.3)
TYR (11q14.3) / SLMAP (3p14.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLMAP   16643
Cards
Entrez_Gene (NCBI)SLMAP  7871  sarcolemma associated protein
AliasesSLAP
GeneCards (Weizmann)SLMAP
Ensembl hg19 (Hinxton)ENSG00000163681 [Gene_View]  chr3:57742983-57915730 [Contig_View]  SLMAP [Vega]
Ensembl hg38 (Hinxton)ENSG00000163681 [Gene_View]  chr3:57742983-57915730 [Contig_View]  SLMAP [Vega]
ICGC DataPortalENSG00000163681
TCGA cBioPortalSLMAP
AceView (NCBI)SLMAP
Genatlas (Paris)SLMAP
WikiGenes7871
SOURCE (Princeton)SLMAP
Genetics Home Reference (NIH)SLMAP
Genomic and cartography
GoldenPath hg19 (UCSC)SLMAP  -     chr3:57742983-57915730 +  3p14.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SLMAP  -     3p14.3   [Description]    (hg38-Dec_2013)
EnsemblSLMAP - 3p14.3 [CytoView hg19]  SLMAP - 3p14.3 [CytoView hg38]
Mapping of homologs : NCBISLMAP [Mapview hg19]  SLMAP [Mapview hg38]
OMIM602701   
Gene and transcription
Genbank (Entrez)AB046821 AF100750 AF304450 AK022561 AK124200
RefSeq transcript (Entrez)NM_001304420 NM_001304421 NM_001304422 NM_001304423 NM_007159
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_022517 NW_004929309
Consensus coding sequences : CCDS (NCBI)SLMAP
Cluster EST : UnigeneHs.574978 [ NCBI ]
CGAP (NCI)Hs.574978
Alternative Splicing GalleryENSG00000163681
Gene ExpressionSLMAP [ NCBI-GEO ]   SLMAP [ EBI - ARRAY_EXPRESS ]   SLMAP [ SEEK ]   SLMAP [ MEM ]
Gene Expression Viewer (FireBrowse)SLMAP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7871
GTEX Portal (Tissue expression)SLMAP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14BN4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ14BN4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ14BN4
Splice isoforms : SwissVarQ14BN4
PhosPhoSitePlusQ14BN4
Domaine pattern : Prosite (Expaxy)FHA_DOMAIN (PS50006)   
Domains : Interpro (EBI)FHA_dom    SLMAP    SMAD_FHA_domain   
Domain families : Pfam (Sanger)FHA (PF00498)   
Domain families : Pfam (NCBI)pfam00498   
Domain families : Smart (EMBL)FHA (SM00240)  
Conserved Domain (NCBI)SLMAP
DMDM Disease mutations7871
Blocks (Seattle)SLMAP
SuperfamilyQ14BN4
Human Protein AtlasENSG00000163681
Peptide AtlasQ14BN4
HPRD04079
IPIIPI00791574   IPI00794566   IPI00030531   IPI00026691   IPI00794462   IPI00446339   IPI00432472   IPI00795406   IPI00922131   IPI01019103   IPI00945969   IPI00945565   IPI01014904   IPI00946401   IPI00946253   IPI00946123   
Protein Interaction databases
DIP (DOE-UCLA)Q14BN4
IntAct (EBI)Q14BN4
FunCoupENSG00000163681
BioGRIDSLMAP
STRING (EMBL)SLMAP
ZODIACSLMAP
Ontologies - Pathways
QuickGOQ14BN4
Ontology : AmiGOprotein binding  smooth endoplasmic reticulum  microtubule organizing center  integral component of plasma membrane  muscle contraction  sarcolemma  
Ontology : EGO-EBIprotein binding  smooth endoplasmic reticulum  microtubule organizing center  integral component of plasma membrane  muscle contraction  sarcolemma  
NDEx NetworkSLMAP
Atlas of Cancer Signalling NetworkSLMAP
Wikipedia pathwaysSLMAP
Orthology - Evolution
OrthoDB7871
GeneTree (enSembl)ENSG00000163681
Phylogenetic Trees/Animal Genes : TreeFamSLMAP
HOVERGENQ14BN4
HOGENOMQ14BN4
Homologs : HomoloGeneSLMAP
Homology/Alignments : Family Browser (UCSC)SLMAP
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLMAP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLMAP
dbVarSLMAP
ClinVarSLMAP
1000_GenomesSLMAP 
Exome Variant ServerSLMAP
ExAC (Exome Aggregation Consortium)SLMAP (select the gene name)
Genetic variants : HAPMAP7871
Genomic Variants (DGV)SLMAP [DGVbeta]
DECIPHER (Syndromes)3:57742983-57915730  ENSG00000163681
CONAN: Copy Number AnalysisSLMAP 
Mutations
ICGC Data PortalSLMAP 
TCGA Data PortalSLMAP 
Broad Tumor PortalSLMAP
OASIS PortalSLMAP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLMAP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLMAP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLMAP
DgiDB (Drug Gene Interaction Database)SLMAP
DoCM (Curated mutations)SLMAP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLMAP (select a term)
intoGenSLMAP
Cancer3DSLMAP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602701   
Orphanet8022   
MedgenSLMAP
Genetic Testing Registry SLMAP
NextProtQ14BN4 [Medical]
TSGene7871
GENETestsSLMAP
Huge Navigator SLMAP [HugePedia]
snp3D : Map Gene to Disease7871
BioCentury BCIQSLMAP
ClinGenSLMAP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7871
Chemical/Pharm GKB GenePA38179
Clinical trialSLMAP
Miscellaneous
canSAR (ICR)SLMAP (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLMAP
EVEXSLMAP
GoPubMedSLMAP
iHOPSLMAP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 12:44:03 CET 2017

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