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SLMO1 (slowmo homolog 1 (Drosophila))

Identity

Other aliasC18orf43
HFL-EDDG1
PRELID3A
HGNC (Hugo) SLMO1
LocusID (NCBI) 10650
Atlas_Id 73526
Location 18p11.21  [Link to chromosome band 18p11]
Location_base_pair Starts at 12407895 and ends at 12432236 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLMO1   24639
Cards
Entrez_Gene (NCBI)SLMO1  10650  slowmo homolog 1 (Drosophila)
AliasesC18orf43; HFL-EDDG1; PRELID3A
GeneCards (Weizmann)SLMO1
Ensembl hg19 (Hinxton)ENSG00000141391 [Gene_View]  chr18:12407895-12432236 [Contig_View]  SLMO1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000141391 [Gene_View]  chr18:12407895-12432236 [Contig_View]  SLMO1 [Vega]
ICGC DataPortalENSG00000141391
TCGA cBioPortalSLMO1
AceView (NCBI)SLMO1
Genatlas (Paris)SLMO1
WikiGenes10650
SOURCE (Princeton)SLMO1
Genetics Home Reference (NIH)SLMO1
Genomic and cartography
GoldenPath hg19 (UCSC)SLMO1  -     chr18:12407895-12432236 +  18p11.21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SLMO1  -     18p11.21   [Description]    (hg38-Dec_2013)
EnsemblSLMO1 - 18p11.21 [CytoView hg19]  SLMO1 - 18p11.21 [CytoView hg38]
Mapping of homologs : NCBISLMO1 [Mapview hg19]  SLMO1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF048849 AK056046 AK303325 AL359942 BC007528
RefSeq transcript (Entrez)NM_001142405 NM_001142406 NM_006553
RefSeq genomic (Entrez)NC_000018 NC_018929 NT_010859 NW_004929409
Consensus coding sequences : CCDS (NCBI)SLMO1
Cluster EST : UnigeneHs.514718 [ NCBI ]
CGAP (NCI)Hs.514718
Alternative Splicing GalleryENSG00000141391
Gene ExpressionSLMO1 [ NCBI-GEO ]   SLMO1 [ EBI - ARRAY_EXPRESS ]   SLMO1 [ SEEK ]   SLMO1 [ MEM ]
Gene Expression Viewer (FireBrowse)SLMO1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10650
GTEX Portal (Tissue expression)SLMO1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96N28   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96N28  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96N28
Splice isoforms : SwissVarQ96N28
PhosPhoSitePlusQ96N28
Domaine pattern : Prosite (Expaxy)PRELI_MSF1 (PS50904)   
Domains : Interpro (EBI)PRELI/MSF1   
Domain families : Pfam (Sanger)PRELI (PF04707)   
Domain families : Pfam (NCBI)pfam04707   
Conserved Domain (NCBI)SLMO1
DMDM Disease mutations10650
Blocks (Seattle)SLMO1
SuperfamilyQ96N28
Human Protein AtlasENSG00000141391
Peptide AtlasQ96N28
HPRD09981
IPIIPI00795625   IPI00386804   IPI00298490   
Protein Interaction databases
DIP (DOE-UCLA)Q96N28
IntAct (EBI)Q96N28
FunCoupENSG00000141391
BioGRIDSLMO1
STRING (EMBL)SLMO1
ZODIACSLMO1
Ontologies - Pathways
QuickGOQ96N28
Ontology : AmiGOmitochondrial intermembrane space  phospholipid transport  positive regulation of protein targeting to mitochondrion  phosphatidic acid transporter activity  
Ontology : EGO-EBImitochondrial intermembrane space  phospholipid transport  positive regulation of protein targeting to mitochondrion  phosphatidic acid transporter activity  
NDEx NetworkSLMO1
Atlas of Cancer Signalling NetworkSLMO1
Wikipedia pathwaysSLMO1
Orthology - Evolution
OrthoDB10650
GeneTree (enSembl)ENSG00000141391
Phylogenetic Trees/Animal Genes : TreeFamSLMO1
HOVERGENQ96N28
HOGENOMQ96N28
Homologs : HomoloGeneSLMO1
Homology/Alignments : Family Browser (UCSC)SLMO1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLMO1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLMO1
dbVarSLMO1
ClinVarSLMO1
1000_GenomesSLMO1 
Exome Variant ServerSLMO1
ExAC (Exome Aggregation Consortium)SLMO1 (select the gene name)
Genetic variants : HAPMAP10650
Genomic Variants (DGV)SLMO1 [DGVbeta]
DECIPHER (Syndromes)18:12407895-12432236  ENSG00000141391
CONAN: Copy Number AnalysisSLMO1 
Mutations
ICGC Data PortalSLMO1 
TCGA Data PortalSLMO1 
Broad Tumor PortalSLMO1
OASIS PortalSLMO1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLMO1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLMO1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLMO1
DgiDB (Drug Gene Interaction Database)SLMO1
DoCM (Curated mutations)SLMO1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLMO1 (select a term)
intoGenSLMO1
Cancer3DSLMO1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSLMO1
Genetic Testing Registry SLMO1
NextProtQ96N28 [Medical]
TSGene10650
GENETestsSLMO1
Huge Navigator SLMO1 [HugePedia]
snp3D : Map Gene to Disease10650
BioCentury BCIQSLMO1
ClinGenSLMO1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10650
Chemical/Pharm GKB GenePA162403903
Clinical trialSLMO1
Miscellaneous
canSAR (ICR)SLMO1 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLMO1
EVEXSLMO1
GoPubMedSLMO1
iHOPSLMO1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:44:03 CET 2017

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