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SLMO2 (slowmo homolog 2 (Drosophila))

Identity

Other aliasC20orf45
PRELID3B
dJ543J19.5
HGNC (Hugo) SLMO2
LocusID (NCBI) 51012
Atlas_Id 73527
Location 20q13.32  [Link to chromosome band 20q13]
Location_base_pair Starts at 57608200 and ends at 57617901 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLMO2   15892
Cards
Entrez_Gene (NCBI)SLMO2  51012  slowmo homolog 2 (Drosophila)
AliasesC20orf45; PRELID3B; dJ543J19.5
GeneCards (Weizmann)SLMO2
Ensembl hg19 (Hinxton)ENSG00000101166 [Gene_View]  chr20:57608200-57617901 [Contig_View]  SLMO2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000101166 [Gene_View]  chr20:57608200-57617901 [Contig_View]  SLMO2 [Vega]
ICGC DataPortalENSG00000101166
TCGA cBioPortalSLMO2
AceView (NCBI)SLMO2
Genatlas (Paris)SLMO2
WikiGenes51012
SOURCE (Princeton)SLMO2
Genetics Home Reference (NIH)SLMO2
Genomic and cartography
GoldenPath hg19 (UCSC)SLMO2  -     chr20:57608200-57617901 -  20q13.32   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SLMO2  -     20q13.32   [Description]    (hg38-Dec_2013)
EnsemblSLMO2 - 20q13.32 [CytoView hg19]  SLMO2 - 20q13.32 [CytoView hg38]
Mapping of homologs : NCBISLMO2 [Mapview hg19]  SLMO2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF151865 AK002157 AK298135 AK314449 BC010649
RefSeq transcript (Entrez)NM_001256403 NM_016045
RefSeq genomic (Entrez)NC_000020 NC_018931 NT_011362 NW_004929418
Consensus coding sequences : CCDS (NCBI)SLMO2
Cluster EST : UnigeneHs.656865 [ NCBI ]
CGAP (NCI)Hs.656865
Alternative Splicing GalleryENSG00000101166
Gene ExpressionSLMO2 [ NCBI-GEO ]   SLMO2 [ EBI - ARRAY_EXPRESS ]   SLMO2 [ SEEK ]   SLMO2 [ MEM ]
Gene Expression Viewer (FireBrowse)SLMO2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51012
GTEX Portal (Tissue expression)SLMO2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y3B1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y3B1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y3B1
Splice isoforms : SwissVarQ9Y3B1
PhosPhoSitePlusQ9Y3B1
Domaine pattern : Prosite (Expaxy)PRELI_MSF1 (PS50904)   
Domains : Interpro (EBI)PRELI/MSF1   
Domain families : Pfam (Sanger)PRELI (PF04707)   
Domain families : Pfam (NCBI)pfam04707   
Conserved Domain (NCBI)SLMO2
DMDM Disease mutations51012
Blocks (Seattle)SLMO2
SuperfamilyQ9Y3B1
Human Protein AtlasENSG00000101166
Peptide AtlasQ9Y3B1
HPRD12771
IPIIPI00219778   IPI00552404   IPI00975539   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y3B1
IntAct (EBI)Q9Y3B1
FunCoupENSG00000101166
BioGRIDSLMO2
STRING (EMBL)SLMO2
ZODIACSLMO2
Ontologies - Pathways
QuickGOQ9Y3B1
Ontology : AmiGOmitochondrial intermembrane space  phospholipid transport  phosphatidic acid transporter activity  
Ontology : EGO-EBImitochondrial intermembrane space  phospholipid transport  phosphatidic acid transporter activity  
NDEx NetworkSLMO2
Atlas of Cancer Signalling NetworkSLMO2
Wikipedia pathwaysSLMO2
Orthology - Evolution
OrthoDB51012
GeneTree (enSembl)ENSG00000101166
Phylogenetic Trees/Animal Genes : TreeFamSLMO2
HOVERGENQ9Y3B1
HOGENOMQ9Y3B1
Homologs : HomoloGeneSLMO2
Homology/Alignments : Family Browser (UCSC)SLMO2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLMO2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLMO2
dbVarSLMO2
ClinVarSLMO2
1000_GenomesSLMO2 
Exome Variant ServerSLMO2
ExAC (Exome Aggregation Consortium)SLMO2 (select the gene name)
Genetic variants : HAPMAP51012
Genomic Variants (DGV)SLMO2 [DGVbeta]
DECIPHER (Syndromes)20:57608200-57617901  ENSG00000101166
CONAN: Copy Number AnalysisSLMO2 
Mutations
ICGC Data PortalSLMO2 
TCGA Data PortalSLMO2 
Broad Tumor PortalSLMO2
OASIS PortalSLMO2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLMO2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLMO2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLMO2
DgiDB (Drug Gene Interaction Database)SLMO2
DoCM (Curated mutations)SLMO2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLMO2 (select a term)
intoGenSLMO2
Cancer3DSLMO2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSLMO2
Genetic Testing Registry SLMO2
NextProtQ9Y3B1 [Medical]
TSGene51012
GENETestsSLMO2
Huge Navigator SLMO2 [HugePedia]
snp3D : Map Gene to Disease51012
BioCentury BCIQSLMO2
ClinGenSLMO2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51012
Chemical/Pharm GKB GenePA162403922
Clinical trialSLMO2
Miscellaneous
canSAR (ICR)SLMO2 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLMO2
EVEXSLMO2
GoPubMedSLMO2
iHOPSLMO2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:44:03 CET 2017

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