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SLN (sarcolipin)

Identity

Alias_symbol (synonym)MGC12301
MGC125854
MGC125855
Other alias-
HGNC (Hugo) SLN
LocusID (NCBI) 6588
Atlas_Id 73529
Location 11q22.3  [Link to chromosome band 11q22]
Location_base_pair Starts at 107707375 and ends at 107712061 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SLN (11q22.3) / CADM2 (3p12.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLN   11089
Cards
Entrez_Gene (NCBI)SLN  6588  sarcolipin
Aliases
GeneCards (Weizmann)SLN
Ensembl hg19 (Hinxton)ENSG00000170290 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170290 [Gene_View]  chr11:107707375-107712061 [Contig_View]  SLN [Vega]
ICGC DataPortalENSG00000170290
TCGA cBioPortalSLN
AceView (NCBI)SLN
Genatlas (Paris)SLN
WikiGenes6588
SOURCE (Princeton)SLN
Genetics Home Reference (NIH)SLN
Genomic and cartography
GoldenPath hg38 (UCSC)SLN  -     chr11:107707375-107712061 -  11q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLN  -     11q22.3   [Description]    (hg19-Feb_2009)
EnsemblSLN - 11q22.3 [CytoView hg19]  SLN - 11q22.3 [CytoView hg38]
Mapping of homologs : NCBISLN [Mapview hg19]  SLN [Mapview hg38]
OMIM602203   
Gene and transcription
Genbank (Entrez)AK312097 BC005261 BC094685 BC104150 BC104185
RefSeq transcript (Entrez)NM_003063
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLN
Cluster EST : UnigeneHs.334629 [ NCBI ]
CGAP (NCI)Hs.334629
Alternative Splicing GalleryENSG00000170290
Gene ExpressionSLN [ NCBI-GEO ]   SLN [ EBI - ARRAY_EXPRESS ]   SLN [ SEEK ]   SLN [ MEM ]
Gene Expression Viewer (FireBrowse)SLN [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6588
GTEX Portal (Tissue expression)SLN
Protein : pattern, domain, 3D structure
UniProt/SwissProtO00631   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO00631  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO00631
Splice isoforms : SwissVarO00631
PhosPhoSitePlusO00631
Domains : Interpro (EBI)Sarcolipin   
Domain families : Pfam (Sanger)Sarcolipin (PF05366)   
Domain families : Pfam (NCBI)pfam05366   
Conserved Domain (NCBI)SLN
DMDM Disease mutations6588
Blocks (Seattle)SLN
PDB (SRS)1JDM   
PDB (PDBSum)1JDM   
PDB (IMB)1JDM   
PDB (RSDB)1JDM   
Structural Biology KnowledgeBase1JDM   
SCOP (Structural Classification of Proteins)1JDM   
CATH (Classification of proteins structures)1JDM   
SuperfamilyO00631
Human Protein AtlasENSG00000170290
Peptide AtlasO00631
HPRD03729
IPIIPI00012586   
Protein Interaction databases
DIP (DOE-UCLA)O00631
IntAct (EBI)O00631
FunCoupENSG00000170290
BioGRIDSLN
STRING (EMBL)SLN
ZODIACSLN
Ontologies - Pathways
QuickGOO00631
Ontology : AmiGOenzyme inhibitor activity  protein binding  calcium ion transport  integral component of membrane  sarcoplasmic reticulum  sarcoplasmic reticulum membrane  negative regulation of catalytic activity  negative regulation of protein complex disassembly  ATPase binding  regulation of calcium ion transport  sarcoplasmic reticulum calcium ion transport  sarcoplasmic reticulum calcium ion transport  negative regulation of calcium ion import  negative regulation of calcium ion transmembrane transporter activity  regulation of relaxation of muscle  regulation of relaxation of muscle  negative regulation of calcium ion binding  positive regulation of protein depolymerization  regulation of calcium-transporting ATPase activity  
Ontology : EGO-EBIenzyme inhibitor activity  protein binding  calcium ion transport  integral component of membrane  sarcoplasmic reticulum  sarcoplasmic reticulum membrane  negative regulation of catalytic activity  negative regulation of protein complex disassembly  ATPase binding  regulation of calcium ion transport  sarcoplasmic reticulum calcium ion transport  sarcoplasmic reticulum calcium ion transport  negative regulation of calcium ion import  negative regulation of calcium ion transmembrane transporter activity  regulation of relaxation of muscle  regulation of relaxation of muscle  negative regulation of calcium ion binding  positive regulation of protein depolymerization  regulation of calcium-transporting ATPase activity  
NDEx NetworkSLN
Atlas of Cancer Signalling NetworkSLN
Wikipedia pathwaysSLN
Orthology - Evolution
OrthoDB6588
GeneTree (enSembl)ENSG00000170290
Phylogenetic Trees/Animal Genes : TreeFamSLN
HOVERGENO00631
HOGENOMO00631
Homologs : HomoloGeneSLN
Homology/Alignments : Family Browser (UCSC)SLN
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLN
dbVarSLN
ClinVarSLN
1000_GenomesSLN 
Exome Variant ServerSLN
ExAC (Exome Aggregation Consortium)SLN (select the gene name)
Genetic variants : HAPMAP6588
Genomic Variants (DGV)SLN [DGVbeta]
DECIPHERSLN [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLN 
Mutations
ICGC Data PortalSLN 
TCGA Data PortalSLN 
Broad Tumor PortalSLN
OASIS PortalSLN [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLN  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLN
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLN
DgiDB (Drug Gene Interaction Database)SLN
DoCM (Curated mutations)SLN (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLN (select a term)
intoGenSLN
Cancer3DSLN(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602203   
Orphanet
MedgenSLN
Genetic Testing Registry SLN
NextProtO00631 [Medical]
TSGene6588
GENETestsSLN
Target ValidationSLN
Huge Navigator SLN [HugePedia]
snp3D : Map Gene to Disease6588
BioCentury BCIQSLN
ClinGenSLN
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6588
Chemical/Pharm GKB GenePA35942
Clinical trialSLN
Miscellaneous
canSAR (ICR)SLN (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLN
EVEXSLN
GoPubMedSLN
iHOPSLN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:41:36 CEST 2017

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