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SLU7 (SLU7 homolog, splicing factor)

Identity

Alias_namesSLU7 splicing factor homolog (S. cerevisiae)
Alias_symbol (synonym)9G8
Other aliashSlu7
HGNC (Hugo) SLU7
LocusID (NCBI) 10569
Atlas_Id 52328
Location 5q33.3  [Link to chromosome band 5q33]
Location_base_pair Starts at 160401641 and ends at 160419161 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NIP7 (16q22.1) / SLU7 (5q33.3)SLU7 (5q33.3) / JCHAIN (4q13.3)SLU7 (5q33.3) / SLU7 (5q33.3)
SMARCA4 (19p13.2) / SLU7 (5q33.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLU7   16939
Cards
Entrez_Gene (NCBI)SLU7  10569  SLU7 homolog, splicing factor
Aliases9G8; hSlu7
GeneCards (Weizmann)SLU7
Ensembl hg19 (Hinxton)ENSG00000164609 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164609 [Gene_View]  chr5:160401641-160419161 [Contig_View]  SLU7 [Vega]
ICGC DataPortalENSG00000164609
TCGA cBioPortalSLU7
AceView (NCBI)SLU7
Genatlas (Paris)SLU7
WikiGenes10569
SOURCE (Princeton)SLU7
Genetics Home Reference (NIH)SLU7
Genomic and cartography
GoldenPath hg38 (UCSC)SLU7  -     chr5:160401641-160419161 -  5q33.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLU7  -     5q33.3   [Description]    (hg19-Feb_2009)
EnsemblSLU7 - 5q33.3 [CytoView hg19]  SLU7 - 5q33.3 [CytoView hg38]
Mapping of homologs : NCBISLU7 [Mapview hg19]  SLU7 [Mapview hg38]
OMIM605974   
Gene and transcription
Genbank (Entrez)AF101074 AK000813 AK024875 AK314564 AY486334
RefSeq transcript (Entrez)NM_006425
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLU7
Cluster EST : UnigeneHs.435342 [ NCBI ]
CGAP (NCI)Hs.435342
Alternative Splicing GalleryENSG00000164609
Gene ExpressionSLU7 [ NCBI-GEO ]   SLU7 [ EBI - ARRAY_EXPRESS ]   SLU7 [ SEEK ]   SLU7 [ MEM ]
Gene Expression Viewer (FireBrowse)SLU7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10569
GTEX Portal (Tissue expression)SLU7
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95391   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95391  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95391
Splice isoforms : SwissVarO95391
PhosPhoSitePlusO95391
Domains : Interpro (EBI)Slu7   
Domain families : Pfam (Sanger)Slu7 (PF11708)   
Domain families : Pfam (NCBI)pfam11708   
Conserved Domain (NCBI)SLU7
DMDM Disease mutations10569
Blocks (Seattle)SLU7
SuperfamilyO95391
Human Protein AtlasENSG00000164609
Peptide AtlasO95391
HPRD12074
IPIIPI00294435   IPI00979191   IPI00978974   IPI00979899   
Protein Interaction databases
DIP (DOE-UCLA)O95391
IntAct (EBI)O95391
FunCoupENSG00000164609
BioGRIDSLU7
STRING (EMBL)SLU7
ZODIACSLU7
Ontologies - Pathways
QuickGOO95391
Ontology : AmiGORNA splicing, via transesterification reactions  alternative mRNA splicing, via spliceosome  second spliceosomal transesterification activity  mRNA 3'-splice site recognition  mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  protein binding  nucleus  nucleoplasm  nucleoplasm  spliceosomal complex  cytoplasm  cytosol  termination of RNA polymerase II transcription  RNA export from nucleus  mRNA export from nucleus  intracellular protein transport  zinc ion binding  membrane  nuclear speck  small nuclear ribonucleoprotein complex  pre-mRNA 3'-splice site binding  mRNA 3'-end processing  cellular response to heat  intracellular membrane-bounded organelle  catalytic step 2 spliceosome  
Ontology : EGO-EBIRNA splicing, via transesterification reactions  alternative mRNA splicing, via spliceosome  second spliceosomal transesterification activity  mRNA 3'-splice site recognition  mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  protein binding  nucleus  nucleoplasm  nucleoplasm  spliceosomal complex  cytoplasm  cytosol  termination of RNA polymerase II transcription  RNA export from nucleus  mRNA export from nucleus  intracellular protein transport  zinc ion binding  membrane  nuclear speck  small nuclear ribonucleoprotein complex  pre-mRNA 3'-splice site binding  mRNA 3'-end processing  cellular response to heat  intracellular membrane-bounded organelle  catalytic step 2 spliceosome  
Pathways : KEGGSpliceosome   
NDEx NetworkSLU7
Atlas of Cancer Signalling NetworkSLU7
Wikipedia pathwaysSLU7
Orthology - Evolution
OrthoDB10569
GeneTree (enSembl)ENSG00000164609
Phylogenetic Trees/Animal Genes : TreeFamSLU7
HOVERGENO95391
HOGENOMO95391
Homologs : HomoloGeneSLU7
Homology/Alignments : Family Browser (UCSC)SLU7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLU7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLU7
dbVarSLU7
ClinVarSLU7
1000_GenomesSLU7 
Exome Variant ServerSLU7
ExAC (Exome Aggregation Consortium)SLU7 (select the gene name)
Genetic variants : HAPMAP10569
Genomic Variants (DGV)SLU7 [DGVbeta]
DECIPHERSLU7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLU7 
Mutations
ICGC Data PortalSLU7 
TCGA Data PortalSLU7 
Broad Tumor PortalSLU7
OASIS PortalSLU7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLU7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLU7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLU7
DgiDB (Drug Gene Interaction Database)SLU7
DoCM (Curated mutations)SLU7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLU7 (select a term)
intoGenSLU7
Cancer3DSLU7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605974   
Orphanet
MedgenSLU7
Genetic Testing Registry SLU7
NextProtO95391 [Medical]
TSGene10569
GENETestsSLU7
Huge Navigator SLU7 [HugePedia]
snp3D : Map Gene to Disease10569
BioCentury BCIQSLU7
ClinGenSLU7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10569
Chemical/Pharm GKB GenePA128394574
Clinical trialSLU7
Miscellaneous
canSAR (ICR)SLU7 (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLU7
EVEXSLU7
GoPubMedSLU7
iHOPSLU7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:38:04 CEST 2017

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