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SLURP1 (secreted LY6/PLAUR domain containing 1)

Identity

Alias_symbol (synonym)ARS
ANUP
MDM
ArsB
LY6LS
Other alias
HGNC (Hugo) SLURP1
LocusID (NCBI) 57152
Atlas_Id 709
Location 8q24.3  [Link to chromosome band 8q24]
Location_base_pair Starts at 142740944 and ends at 142742411 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Leukemias implicated (Data extracted from papers in the Atlas) [ 1 ]
  Chronic myelogenous leukaemia (CML)


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Liver tumors: an overview


External links

Nomenclature
HGNC (Hugo)SLURP1   18746
Cards
Entrez_Gene (NCBI)SLURP1  57152  secreted LY6/PLAUR domain containing 1
AliasesANUP; ARS; ArsB; LY6LS; 
MDM
GeneCards (Weizmann)SLURP1
Ensembl hg19 (Hinxton)ENSG00000126233 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000126233 [Gene_View]  chr8:142740944-142742411 [Contig_View]  SLURP1 [Vega]
ICGC DataPortalENSG00000126233
TCGA cBioPortalSLURP1
AceView (NCBI)SLURP1
Genatlas (Paris)SLURP1
WikiGenes57152
SOURCE (Princeton)SLURP1
Genetics Home Reference (NIH)SLURP1
Genomic and cartography
GoldenPath hg38 (UCSC)SLURP1  -     chr8:142740944-142742411 -  8q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLURP1  -     8q24.3   [Description]    (hg19-Feb_2009)
EnsemblSLURP1 - 8q24.3 [CytoView hg19]  SLURP1 - 8q24.3 [CytoView hg38]
Mapping of homologs : NCBISLURP1 [Mapview hg19]  SLURP1 [Mapview hg38]
OMIM248300   606119   
Gene and transcription
Genbank (Entrez)AY579079 AY579080 BC069292 BC105133 BC105135
RefSeq transcript (Entrez)NM_020427
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLURP1
Cluster EST : UnigeneHs.676358 [ NCBI ]
CGAP (NCI)Hs.676358
Alternative Splicing GalleryENSG00000126233
Gene ExpressionSLURP1 [ NCBI-GEO ]   SLURP1 [ EBI - ARRAY_EXPRESS ]   SLURP1 [ SEEK ]   SLURP1 [ MEM ]
Gene Expression Viewer (FireBrowse)SLURP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57152
GTEX Portal (Tissue expression)SLURP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP55000   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP55000  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP55000
Splice isoforms : SwissVarP55000
PhosPhoSitePlusP55000
Domains : Interpro (EBI)LY6_UPA_recep-like   
Domain families : Pfam (Sanger)UPAR_LY6 (PF00021)   
Domain families : Pfam (NCBI)pfam00021   
Conserved Domain (NCBI)SLURP1
DMDM Disease mutations57152
Blocks (Seattle)SLURP1
PDB (SRS)2MUO    2MUP   
PDB (PDBSum)2MUO    2MUP   
PDB (IMB)2MUO    2MUP   
PDB (RSDB)2MUO    2MUP   
Structural Biology KnowledgeBase2MUO    2MUP   
SCOP (Structural Classification of Proteins)2MUO    2MUP   
CATH (Classification of proteins structures)2MUO    2MUP   
SuperfamilyP55000
Human Protein AtlasENSG00000126233
Peptide AtlasP55000
HPRD05836
IPIIPI00022620   
Protein Interaction databases
DIP (DOE-UCLA)P55000
IntAct (EBI)P55000
FunCoupENSG00000126233
BioGRIDSLURP1
STRING (EMBL)SLURP1
ZODIACSLURP1
Ontologies - Pathways
QuickGOP55000
Ontology : AmiGOcell activation  cell activation  cytokine activity  extracellular region  extracellular space  cell adhesion  locomotory behavior  negative regulation of keratinocyte proliferation  negative regulation of cell migration  neuromuscular process controlling posture  extracellular exosome  
Ontology : EGO-EBIcell activation  cell activation  cytokine activity  extracellular region  extracellular space  cell adhesion  locomotory behavior  negative regulation of keratinocyte proliferation  negative regulation of cell migration  neuromuscular process controlling posture  extracellular exosome  
NDEx NetworkSLURP1
Atlas of Cancer Signalling NetworkSLURP1
Wikipedia pathwaysSLURP1
Orthology - Evolution
OrthoDB57152
GeneTree (enSembl)ENSG00000126233
Phylogenetic Trees/Animal Genes : TreeFamSLURP1
HOVERGENP55000
HOGENOMP55000
Homologs : HomoloGeneSLURP1
Homology/Alignments : Family Browser (UCSC)SLURP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLURP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLURP1
dbVarSLURP1
ClinVarSLURP1
1000_GenomesSLURP1 
Exome Variant ServerSLURP1
ExAC (Exome Aggregation Consortium)SLURP1 (select the gene name)
Genetic variants : HAPMAP57152
Genomic Variants (DGV)SLURP1 [DGVbeta]
DECIPHERSLURP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLURP1 
Mutations
ICGC Data PortalSLURP1 
TCGA Data PortalSLURP1 
Broad Tumor PortalSLURP1
OASIS PortalSLURP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLURP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLURP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLURP1
DgiDB (Drug Gene Interaction Database)SLURP1
DoCM (Curated mutations)SLURP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLURP1 (select a term)
intoGenSLURP1
Cancer3DSLURP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM248300    606119   
Orphanet11800   
MedgenSLURP1
Genetic Testing Registry SLURP1
NextProtP55000 [Medical]
TSGene57152
GENETestsSLURP1
Target ValidationSLURP1
Huge Navigator SLURP1 [HugePedia]
snp3D : Map Gene to Disease57152
BioCentury BCIQSLURP1
ClinGenSLURP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57152
Chemical/Pharm GKB GenePA134936818
Clinical trialSLURP1
Miscellaneous
canSAR (ICR)SLURP1 (select the gene name)
Probes
Litterature
PubMed37 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLURP1
EVEXSLURP1
GoPubMedSLURP1
iHOPSLURP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:56:26 CEST 2017

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