Atlas of Genetics and Cytogenetics in Oncology and Haematology

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SLX1A-SULT1A3 (SLX1A-SULT1A3 readthrough (NMD candidate))

Identity

Alias_namesSLX1A-SULT1A3 readthrough (non-protein coding)
Other alias-
HGNC (Hugo) SLX1A-SULT1A3
LocusID (NCBI) 100526830
Atlas_Id 73530
Location 16p11.2  [Link to chromosome band 16p11]
Location_base_pair Starts at 29455091 and ends at 29464980 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SLX1A-SULT1A3   44437
Cards
Entrez_Gene (NCBI)SLX1A-SULT1A3  100526830  SLX1A-SULT1A3 readthrough (NMD candidate)
Aliases
GeneCards (Weizmann)SLX1A-SULT1A3
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr16:29455091-29464980 [Contig_View]  SLX1A-SULT1A3 [Vega]
TCGA cBioPortalSLX1A-SULT1A3
AceView (NCBI)SLX1A-SULT1A3
Genatlas (Paris)SLX1A-SULT1A3
WikiGenes100526830
SOURCE (Princeton)SLX1A-SULT1A3
Genetics Home Reference (NIH)SLX1A-SULT1A3
Genomic and cartography
GoldenPath hg38 (UCSC)SLX1A-SULT1A3  -     chr16:29455091-29464980 +  16p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLX1A-SULT1A3  -     16p11.2   [Description]    (hg19-Feb_2009)
EnsemblSLX1A-SULT1A3 - 16p11.2 [CytoView hg19]  SLX1A-SULT1A3 - 16p11.2 [CytoView hg38]
Mapping of homologs : NCBISLX1A-SULT1A3 [Mapview hg19]  SLX1A-SULT1A3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK094769 AK097386 AK122707 AK122733 BC014471
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLX1A-SULT1A3
Cluster EST : UnigeneHs.460558 [ NCBI ]
CGAP (NCI)Hs.460558
Gene ExpressionSLX1A-SULT1A3 [ NCBI-GEO ]   SLX1A-SULT1A3 [ EBI - ARRAY_EXPRESS ]   SLX1A-SULT1A3 [ SEEK ]   SLX1A-SULT1A3 [ MEM ]
Gene Expression Viewer (FireBrowse)SLX1A-SULT1A3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100526830
GTEX Portal (Tissue expression)SLX1A-SULT1A3
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SLX1A-SULT1A3
DMDM Disease mutations100526830
Blocks (Seattle)SLX1A-SULT1A3
Protein Interaction databases
BioGRIDSLX1A-SULT1A3
STRING (EMBL)SLX1A-SULT1A3
ZODIACSLX1A-SULT1A3
Ontologies - Pathways
Huge Navigator SLX1A-SULT1A3 [HugePedia]
snp3D : Map Gene to Disease100526830
BioCentury BCIQSLX1A-SULT1A3
ClinGenSLX1A-SULT1A3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100526830
Clinical trialSLX1A-SULT1A3
Miscellaneous
canSAR (ICR)SLX1A-SULT1A3 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLX1A-SULT1A3
EVEXSLX1A-SULT1A3
GoPubMedSLX1A-SULT1A3
iHOPSLX1A-SULT1A3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:29:50 CEST 2018
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