Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLX4IP (SLX4 interacting protein)

Identity

Alias_namesC20orf94
chromosome 20 open reading frame 94
Alias_symbol (synonym)dJ1099D15.3
Other aliasbA204H22.1
bA254M13.1
HGNC (Hugo) SLX4IP
LocusID (NCBI) 128710
Atlas_Id 55052
Location 20p12.2  [Link to chromosome band 20p12]
Location_base_pair Starts at 10415951 and ends at 10604027 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
SLX4IP (20p12.2) / CDS2 (20p12.3)SLX4IP (20p12.2) / SLC24A3 (20p11.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLX4IP   16225
Cards
Entrez_Gene (NCBI)SLX4IP  128710  SLX4 interacting protein
AliasesC20orf94; bA204H22.1; bA254M13.1; dJ1099D15.3
GeneCards (Weizmann)SLX4IP
Ensembl hg19 (Hinxton)ENSG00000149346 [Gene_View]  chr20:10415951-10604027 [Contig_View]  SLX4IP [Vega]
Ensembl hg38 (Hinxton)ENSG00000149346 [Gene_View]  chr20:10415951-10604027 [Contig_View]  SLX4IP [Vega]
ICGC DataPortalENSG00000149346
TCGA cBioPortalSLX4IP
AceView (NCBI)SLX4IP
Genatlas (Paris)SLX4IP
WikiGenes128710
SOURCE (Princeton)SLX4IP
Genetics Home Reference (NIH)SLX4IP
Genomic and cartography
GoldenPath hg19 (UCSC)SLX4IP  -     chr20:10415951-10604027 +  20p12.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SLX4IP  -     20p12.2   [Description]    (hg38-Dec_2013)
EnsemblSLX4IP - 20p12.2 [CytoView hg19]  SLX4IP - 20p12.2 [CytoView hg38]
Mapping of homologs : NCBISLX4IP [Mapview hg19]  SLX4IP [Mapview hg38]
OMIM615958   
Gene and transcription
Genbank (Entrez)BC020787 BC026094 CA416447
RefSeq transcript (Entrez)NM_001009608
RefSeq genomic (Entrez)NC_000020 NC_018931 NT_011387 NW_004929416
Consensus coding sequences : CCDS (NCBI)SLX4IP
Cluster EST : UnigeneHs.668782 [ NCBI ]
CGAP (NCI)Hs.668782
Alternative Splicing GalleryENSG00000149346
Gene ExpressionSLX4IP [ NCBI-GEO ]   SLX4IP [ EBI - ARRAY_EXPRESS ]   SLX4IP [ SEEK ]   SLX4IP [ MEM ]
Gene Expression Viewer (FireBrowse)SLX4IP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)128710
GTEX Portal (Tissue expression)SLX4IP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VYV7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VYV7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VYV7
Splice isoforms : SwissVarQ5VYV7
PhosPhoSitePlusQ5VYV7
Domains : Interpro (EBI)SLX4IP   
Domain families : Pfam (Sanger)UPF0492 (PF15744)   
Domain families : Pfam (NCBI)pfam15744   
Conserved Domain (NCBI)SLX4IP
DMDM Disease mutations128710
Blocks (Seattle)SLX4IP
SuperfamilyQ5VYV7
Human Protein AtlasENSG00000149346
Peptide AtlasQ5VYV7
HPRD12516
IPIIPI00046188   IPI00983174   
Protein Interaction databases
DIP (DOE-UCLA)Q5VYV7
IntAct (EBI)Q5VYV7
FunCoupENSG00000149346
BioGRIDSLX4IP
STRING (EMBL)SLX4IP
ZODIACSLX4IP
Ontologies - Pathways
QuickGOQ5VYV7
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkSLX4IP
Atlas of Cancer Signalling NetworkSLX4IP
Wikipedia pathwaysSLX4IP
Orthology - Evolution
OrthoDB128710
GeneTree (enSembl)ENSG00000149346
Phylogenetic Trees/Animal Genes : TreeFamSLX4IP
HOVERGENQ5VYV7
HOGENOMQ5VYV7
Homologs : HomoloGeneSLX4IP
Homology/Alignments : Family Browser (UCSC)SLX4IP
Gene fusions - Rearrangements
Fusion : MitelmanSLX4IP/CDS2 [20p12.2/20p12.3]  
Fusion : MitelmanSLX4IP/SLC24A3 [20p12.2/20p11.23]  [t(20;20)(p11;p12)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLX4IP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLX4IP
dbVarSLX4IP
ClinVarSLX4IP
1000_GenomesSLX4IP 
Exome Variant ServerSLX4IP
ExAC (Exome Aggregation Consortium)SLX4IP (select the gene name)
Genetic variants : HAPMAP128710
Genomic Variants (DGV)SLX4IP [DGVbeta]
DECIPHER (Syndromes)20:10415951-10604027  ENSG00000149346
CONAN: Copy Number AnalysisSLX4IP 
Mutations
ICGC Data PortalSLX4IP 
TCGA Data PortalSLX4IP 
Broad Tumor PortalSLX4IP
OASIS PortalSLX4IP [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSLX4IP
BioMutasearch SLX4IP
DgiDB (Drug Gene Interaction Database)SLX4IP
DoCM (Curated mutations)SLX4IP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLX4IP (select a term)
intoGenSLX4IP
Cancer3DSLX4IP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615958   
Orphanet
MedgenSLX4IP
Genetic Testing Registry SLX4IP
NextProtQ5VYV7 [Medical]
TSGene128710
GENETestsSLX4IP
Huge Navigator SLX4IP [HugePedia]
snp3D : Map Gene to Disease128710
BioCentury BCIQSLX4IP
ClinGenSLX4IP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD128710
Chemical/Pharm GKB GenePA25801
Clinical trialSLX4IP
Miscellaneous
canSAR (ICR)SLX4IP (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLX4IP
EVEXSLX4IP
GoPubMedSLX4IP
iHOPSLX4IP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:20:03 CEST 2017

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