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SMA5 (glucuronidase beta pseudogene)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 11042
Atlas_Id 73534
Location 5_GL339449v2_alt  [Link to chromosome band 5]
Location_base_pair Starts at 1056911 and ends at 1288202 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)SMA5  11042  glucuronidase beta pseudogene
Aliases
GeneCards (Weizmann)SMA5
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr5_GL339449v2_alt:1056911-1288202 [Contig_View]  SMA5 [Vega]
TCGA cBioPortalSMA5
AceView (NCBI)SMA5
Genatlas (Paris)SMA5
WikiGenes11042
SOURCE (Princeton)SMA5
Genetics Home Reference (NIH)SMA5
Genomic and cartography
GoldenPath hg38 (UCSC)SMA5  -     chr5_GL339449v2_alt:1056911-1288202 -  5_GL339449v2_alt   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SMA5  -     5_GL339449v2_alt   [Description]    (hg19-Feb_2009)
EnsemblSMA5 - 5_GL339449v2_alt [CytoView hg19]  SMA5 - 5_GL339449v2_alt [CytoView hg38]
Mapping of homologs : NCBISMA5 [Mapview hg19]  SMA5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK289851 BC070286 CN312642 X83301
RefSeq transcript (Entrez)NM_021036
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SMA5
Cluster EST : UnigeneHs.652536 [ NCBI ]
CGAP (NCI)Hs.652536
Gene ExpressionSMA5 [ NCBI-GEO ]   SMA5 [ EBI - ARRAY_EXPRESS ]   SMA5 [ SEEK ]   SMA5 [ MEM ]
Gene Expression Viewer (FireBrowse)SMA5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)11042
GTEX Portal (Tissue expression)SMA5
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SMA5
DMDM Disease mutations11042
Blocks (Seattle)SMA5
HPRD18067
Protein Interaction databases
BioGRIDSMA5
STRING (EMBL)SMA5
ZODIACSMA5
Ontologies - Pathways
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease11042
BioCentury BCIQSMA5
ClinGenSMA5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11042
Chemical/Pharm GKB GenePA128394582
Clinical trialSMA5
Miscellaneous
canSAR (ICR)SMA5 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSMA5
EVEXSMA5
GoPubMedSMA5
iHOPSMA5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:58:54 CET 2017

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