Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SMAD1-AS1 (SMAD1 antisense RNA 1)

Identity

Alias_symbol (synonym)ENST00000513542
Other alias-
HGNC (Hugo) SMAD1-AS1
LocusID (NCBI) 104326058
Atlas_Id 77239
Location 4q31.21  [Link to chromosome band 4q31]
Location_base_pair Starts at 145514578 and ends at 145517194 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SMAD1-AS1   49379
Cards
Entrez_Gene (NCBI)SMAD1-AS1  104326058  SMAD1 antisense RNA 1
Aliases
GeneCards (Weizmann)SMAD1-AS1
Ensembl hg19 (Hinxton)ENSG00000250902 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000250902 [Gene_View]  chr4:145514578-145517194 [Contig_View]  SMAD1-AS1 [Vega]
ICGC DataPortalENSG00000250902
TCGA cBioPortalSMAD1-AS1
AceView (NCBI)SMAD1-AS1
Genatlas (Paris)SMAD1-AS1
WikiGenes104326058
SOURCE (Princeton)SMAD1-AS1
Genetics Home Reference (NIH)SMAD1-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)SMAD1-AS1  -     chr4:145514578-145517194 -  4q31.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SMAD1-AS1  -     4q31.21   [Description]    (hg19-Feb_2009)
EnsemblSMAD1-AS1 - 4q31.21 [CytoView hg19]  SMAD1-AS1 - 4q31.21 [CytoView hg38]
Mapping of homologs : NCBISMAD1-AS1 [Mapview hg19]  SMAD1-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AW087665 HY008085
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SMAD1-AS1
Cluster EST : UnigeneHs.714527 [ NCBI ]
CGAP (NCI)Hs.714527
Alternative Splicing GalleryENSG00000250902
Gene ExpressionSMAD1-AS1 [ NCBI-GEO ]   SMAD1-AS1 [ EBI - ARRAY_EXPRESS ]   SMAD1-AS1 [ SEEK ]   SMAD1-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)SMAD1-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)104326058
GTEX Portal (Tissue expression)SMAD1-AS1
Human Protein AtlasENSG00000250902-SMAD1-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SMAD1-AS1
DMDM Disease mutations104326058
Blocks (Seattle)SMAD1-AS1
Human Protein Atlas [tissue]ENSG00000250902-SMAD1-AS1 [tissue]
Protein Interaction databases
FunCoupENSG00000250902
BioGRIDSMAD1-AS1
STRING (EMBL)SMAD1-AS1
ZODIACSMAD1-AS1
Ontologies - Pathways
Huge Navigator SMAD1-AS1 [HugePedia]
snp3D : Map Gene to Disease104326058
BioCentury BCIQSMAD1-AS1
ClinGenSMAD1-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD104326058
Clinical trialSMAD1-AS1
Miscellaneous
canSAR (ICR)SMAD1-AS1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSMAD1-AS1
EVEXSMAD1-AS1
GoPubMedSMAD1-AS1
iHOPSMAD1-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:10:54 CET 2017

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