Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SMAD5-AS1 (SMAD5 antisense RNA 1)

Identity

Alias_namesSMAD5OS
SMAD family member 5 opposite strand
SMAD5 antisense RNA 1 (non-protein coding)
Alias_symbol (synonym)DAMS
Other aliasSMAD5AS
HGNC (Hugo) SMAD5-AS1
LocusID (NCBI) 9597
Atlas_Id 73536
Location 5q31.1  [Link to chromosome band 5q31]
Location_base_pair Starts at 136129514 and ends at 136134890 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SMAD5-AS1   30586
Cards
Entrez_Gene (NCBI)SMAD5-AS1  9597  SMAD5 antisense RNA 1
AliasesDAMS; SMAD5AS; SMAD5OS
GeneCards (Weizmann)SMAD5-AS1
Ensembl hg19 (Hinxton)ENSG00000164621 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164621 [Gene_View]  chr5:136129514-136134890 [Contig_View]  SMAD5-AS1 [Vega]
ICGC DataPortalENSG00000164621
TCGA cBioPortalSMAD5-AS1
AceView (NCBI)SMAD5-AS1
Genatlas (Paris)SMAD5-AS1
WikiGenes9597
SOURCE (Princeton)SMAD5-AS1
Genetics Home Reference (NIH)SMAD5-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)SMAD5-AS1  -     chr5:136129514-136134890 -  5q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SMAD5-AS1  -     5q31.1   [Description]    (hg19-Feb_2009)
EnsemblSMAD5-AS1 - 5q31.1 [CytoView hg19]  SMAD5-AS1 - 5q31.1 [CytoView hg38]
Mapping of homologs : NCBISMAD5-AS1 [Mapview hg19]  SMAD5-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF071111 AF086556
RefSeq transcript (Entrez)NM_022001
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SMAD5-AS1
Cluster EST : UnigeneHs.59666 [ NCBI ]
CGAP (NCI)Hs.59666
Alternative Splicing GalleryENSG00000164621
Gene ExpressionSMAD5-AS1 [ NCBI-GEO ]   SMAD5-AS1 [ EBI - ARRAY_EXPRESS ]   SMAD5-AS1 [ SEEK ]   SMAD5-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)SMAD5-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9597
GTEX Portal (Tissue expression)SMAD5-AS1
Human Protein AtlasENSG00000164621-SMAD5-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y6J3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y6J3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y6J3
Splice isoforms : SwissVarQ9Y6J3
PhosPhoSitePlusQ9Y6J3
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SMAD5-AS1
DMDM Disease mutations9597
Blocks (Seattle)SMAD5-AS1
SuperfamilyQ9Y6J3
Human Protein Atlas [tissue]ENSG00000164621-SMAD5-AS1 [tissue]
Peptide AtlasQ9Y6J3
HPRD09904
IPIIPI00002360   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y6J3
IntAct (EBI)Q9Y6J3
FunCoupENSG00000164621
BioGRIDSMAD5-AS1
STRING (EMBL)SMAD5-AS1
ZODIACSMAD5-AS1
Ontologies - Pathways
QuickGOQ9Y6J3
Ontology : AmiGOsignal transduction  
Ontology : EGO-EBIsignal transduction  
NDEx NetworkSMAD5-AS1
Atlas of Cancer Signalling NetworkSMAD5-AS1
Wikipedia pathwaysSMAD5-AS1
Orthology - Evolution
OrthoDB9597
GeneTree (enSembl)ENSG00000164621
Phylogenetic Trees/Animal Genes : TreeFamSMAD5-AS1
HOVERGENQ9Y6J3
HOGENOMQ9Y6J3
Homologs : HomoloGeneSMAD5-AS1
Homology/Alignments : Family Browser (UCSC)SMAD5-AS1
Gene fusions - Rearrangements
Tumor Fusion PortalSMAD5-AS1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSMAD5-AS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SMAD5-AS1
dbVarSMAD5-AS1
ClinVarSMAD5-AS1
1000_GenomesSMAD5-AS1 
Exome Variant ServerSMAD5-AS1
ExAC (Exome Aggregation Consortium)ENSG00000164621
GNOMAD BrowserENSG00000164621
Genetic variants : HAPMAP9597
Genomic Variants (DGV)SMAD5-AS1 [DGVbeta]
DECIPHERSMAD5-AS1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSMAD5-AS1 
Mutations
ICGC Data PortalSMAD5-AS1 
TCGA Data PortalSMAD5-AS1 
Broad Tumor PortalSMAD5-AS1
OASIS PortalSMAD5-AS1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSMAD5-AS1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSMAD5-AS1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SMAD5-AS1
DgiDB (Drug Gene Interaction Database)SMAD5-AS1
DoCM (Curated mutations)SMAD5-AS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SMAD5-AS1 (select a term)
intoGenSMAD5-AS1
Cancer3DSMAD5-AS1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSMAD5-AS1
MedgenSMAD5-AS1
Genetic Testing Registry SMAD5-AS1
NextProtQ9Y6J3 [Medical]
TSGene9597
GENETestsSMAD5-AS1
Target ValidationSMAD5-AS1
Huge Navigator SMAD5-AS1 [HugePedia]
snp3D : Map Gene to Disease9597
BioCentury BCIQSMAD5-AS1
ClinGenSMAD5-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9597
Chemical/Pharm GKB GenePA164725848
Clinical trialSMAD5-AS1
Miscellaneous
canSAR (ICR)SMAD5-AS1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSMAD5-AS1
EVEXSMAD5-AS1
GoPubMedSMAD5-AS1
iHOPSMAD5-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:13:05 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.