| Nomenclature | | HGNC (Hugo) | SMAD9 6774 |
| Cards | | Entrez_Gene (NCBI) | SMAD9 4093 SMAD family member 9 |
| GeneCards (Weizmann) | SMAD9 |
| Ensembl (Hinxton) | ENSG00000120693 [Gene_View] chr13:37418968-37494409 [Contig_View] SMAD9 [Vega] |
| ICGC DataPortal | ENSG00000120693 |
| cBioPortal | SMAD9 |
| AceView (NCBI) | SMAD9 |
| Genatlas (Paris) | SMAD9 |
| WikiGenes | 4093 |
| SOURCE (Princeton) | NM_001127217 NM_005905 |
| Genomic and cartography | | GoldenPath (UCSC) | SMAD9 - 13q13.3 chr13:37418968-37494409 - 13q13.3 [Description] (hg19-Feb_2009) |
| Ensembl | SMAD9 - 13q13.3 [CytoView] |
| Mapping of homologs : NCBI | SMAD9 [Mapview] |
| OMIM | 603295 615342 |
| Gene and transcription |
| Genbank (Entrez) | AK311686 AK314920 AW191604 BC011559 BC067766 |
| RefSeq transcript (Entrez) | NM_001127217 NM_005905 |
| RefSeq genomic (Entrez) | AC_000145 NC_000013 NC_018924 NG_016963 NT_024524 NW_001838073 NW_004929388 |
| Consensus coding sequences : CCDS (NCBI) | SMAD9 |
| Cluster EST : Unigene | Hs.123119 [ NCBI ] |
| CGAP (NCI) | Hs.123119 |
| Alternative Splicing : Fast-db (Paris) | GSHG0008423 |
| Alternative Splicing Gallery | ENSG00000120693 |
| Gene Expression | SMAD9 [ NCBI-GEO ] SMAD9 [ SEEK ] SMAD9 [ MEM ] |
| Protein : pattern, domain, 3D structure |
|---|
| UniProt/SwissProt | O15198 (Uniprot) |
| NextProt | O15198 [Medical] |
| With graphics : InterPro | O15198 |
| Splice isoforms : SwissVar | O15198 (Swissvar) |
| Domaine pattern : Prosite (Expaxy) | MH1 (PS51075) MH2 (PS51076) |
| Domains : Interpro (EBI) | Dwarfin [organisation] MAD_homology1_Dwarfin-type [organisation] MAD_homology_MH1 [organisation] SMAD_dom-like [organisation] SMAD_dom_Dwarfin-type [organisation] SMAD_FHA_domain [organisation] |
| Related proteins : CluSTr | O15198 |
| Domain families : Pfam (Sanger) | MH1 (PF03165) MH2 (PF03166) |
| Domain families : Pfam (NCBI) | pfam03165 pfam03166 |
| Domain families : Smart (EMBL) | DWA (SM00523) DWB (SM00524) |
| DMDM Disease mutations | 4093 |
| Blocks (Seattle) | O15198 |
| Human Protein Atlas | ENSG00000120693 [gene] [tissue] [antibody] [cell] [cancer] |
| Peptide Atlas | O15198 |
| IPI | IPI00005223 IPI00216093 |
| Protein Interaction databases |
|---|
| DIP (DOE-UCLA) | O15198 |
| IntAct (EBI) | O15198 |
| FunCoup | ENSG00000120693 |
| BioGRID | SMAD9 |
| InParanoid | O15198 |
| Interologous Interaction database | O15198 |
| IntegromeDB | SMAD9 |
| STRING (EMBL) | SMAD9 |
| Ontologies - Pathways | | Ontology : AmiGO | ureteric bud development response to hypoxia Mullerian duct regression DNA binding sequence-specific DNA binding transcription factor activity protein binding intracellular nucleus nucleoplasm transcription factor complex cytosol transcription, DNA-templated protein phosphorylation transforming growth factor beta receptor signaling pathway BMP signaling pathway transforming growth factor beta receptor, pathway-specific cytoplasmic mediator activity midbrain development hindbrain development intracellular signal transduction positive regulation of cell differentiation positive regulation of transcription, DNA-templated metal ion binding cartilage development bone development cellular response to organic cyclic compound |
| Ontology : EGO-EBI | ureteric bud development response to hypoxia Mullerian duct regression DNA binding sequence-specific DNA binding transcription factor activity protein binding intracellular nucleus nucleoplasm transcription factor complex cytosol transcription, DNA-templated protein phosphorylation transforming growth factor beta receptor signaling pathway BMP signaling pathway transforming growth factor beta receptor, pathway-specific cytoplasmic mediator activity midbrain development hindbrain development intracellular signal transduction positive regulation of cell differentiation positive regulation of transcription, DNA-templated metal ion binding cartilage development bone development cellular response to organic cyclic compound |
| Pathways : KEGG | TGF-beta signaling pathway |
| Protein Interaction Database | SMAD9 |
| Wikipedia pathways | SMAD9 |
| Gene fusion - rearrangments | | Polymorphisms : SNP, mutations, diseases | | SNP Single Nucleotide Polymorphism (NCBI) | SMAD9 |
| snp3D : Map Gene to Disease | 4093 |
| SNP (GeneSNP Utah) | SMAD9 |
| SNP : HGBase | SMAD9 |
| Genetic variants : HAPMAP | SMAD9 |
| Exome Variant | SMAD9 |
| 1000_Genomes | SMAD9 |
| ICGC program | ENSG00000120693 |
| Somatic Mutations in Cancer : COSMIC | SMAD9 |
| CONAN: Copy Number Analysis | SMAD9 |
| Mutations and Diseases : HGMD | SMAD9 |
| Genomic Variants | SMAD9 SMAD9 [DGVbeta] |
| dbVar | SMAD9 |
| ClinVar | SMAD9 |
| Pred. of missenses | PolyPhen-2 SIFT(SG) SIFT(JCVI) Align-GVGD MutAssessor Mutanalyser |
| Pred. splices | GeneSplicer Human Splicing Finder MaxEntScan |
| Diseases | | OMIM | 603295 615342 |
| Medgen | SMAD9 |
| GENETests | SMAD9 |
| Disease Genetic Association | SMAD9 |
| Huge Navigator |
SMAD9 [HugePedia] SMAD9 [HugeCancerGEM] |
| General knowledge |
|---|
| Homologs : HomoloGene | SMAD9 |
| Homology/Alignments : Family Browser (UCSC) | SMAD9 |
| Phylogenetic Trees/Animal Genes : TreeFam | SMAD9 |
| Chemical/Protein Interactions : CTD | 4093 |
| Chemical/Pharm GKB Gene | PA30531 |
| Clinical trial | SMAD9 |
| Cancer Resource (Charite) | ENSG00000120693 |
| Other databases | | Probes |
|---|
| Litterature | | PubMed | 36 Pubmed reference(s) in Entrez |
| CoreMine | SMAD9 |
| iHOP | SMAD9 |
| OncoSearch | SMAD9 |
