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SMAGP (small cell adhesion glycoprotein)

Identity

Alias_symbol (synonym)MGC149453
MGC149454
hSMAGP
Other alias
HGNC (Hugo) SMAGP
LocusID (NCBI) 57228
Atlas_Id 73537
Location 12q13.13  [Link to chromosome band 12q13]
Location_base_pair Starts at 51245349 and ends at 51270418 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
POU6F1 (12q13.13) / SMAGP (12q13.13)SMAGP (12q13.13) / GTPBP2 (6p21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SMAGP   26918
Cards
Entrez_Gene (NCBI)SMAGP  57228  small cell adhesion glycoprotein
AliaseshSMAGP
GeneCards (Weizmann)SMAGP
Ensembl hg19 (Hinxton)ENSG00000170545 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170545 [Gene_View]  chr12:51245349-51270418 [Contig_View]  SMAGP [Vega]
ICGC DataPortalENSG00000170545
TCGA cBioPortalSMAGP
AceView (NCBI)SMAGP
Genatlas (Paris)SMAGP
WikiGenes57228
SOURCE (Princeton)SMAGP
Genetics Home Reference (NIH)SMAGP
Genomic and cartography
GoldenPath hg38 (UCSC)SMAGP  -     chr12:51245349-51270418 -  12q13.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SMAGP  -     12q13.13   [Description]    (hg19-Feb_2009)
EnsemblSMAGP - 12q13.13 [CytoView hg19]  SMAGP - 12q13.13 [CytoView hg38]
Mapping of homologs : NCBISMAGP [Mapview hg19]  SMAGP [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF091087 AK001839 BC001400 BC003379 BC008712
RefSeq transcript (Entrez)NM_001031628 NM_001033873
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SMAGP
Cluster EST : UnigeneHs.652389 [ NCBI ]
CGAP (NCI)Hs.652389
Alternative Splicing GalleryENSG00000170545
Gene ExpressionSMAGP [ NCBI-GEO ]   SMAGP [ EBI - ARRAY_EXPRESS ]   SMAGP [ SEEK ]   SMAGP [ MEM ]
Gene Expression Viewer (FireBrowse)SMAGP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57228
GTEX Portal (Tissue expression)SMAGP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ0VAQ4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ0VAQ4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ0VAQ4
Splice isoforms : SwissVarQ0VAQ4
PhosPhoSitePlusQ0VAQ4
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SMAGP
DMDM Disease mutations57228
Blocks (Seattle)SMAGP
SuperfamilyQ0VAQ4
Human Protein AtlasENSG00000170545
Peptide AtlasQ0VAQ4
HPRD14256
IPIIPI00651713   IPI00007604   
Protein Interaction databases
DIP (DOE-UCLA)Q0VAQ4
IntAct (EBI)Q0VAQ4
FunCoupENSG00000170545
BioGRIDSMAGP
STRING (EMBL)SMAGP
ZODIACSMAGP
Ontologies - Pathways
QuickGOQ0VAQ4
Ontology : AmiGOreceptor activity  receptor binding  protein binding  nucleoplasm  plasma membrane  integral component of plasma membrane  cell-cell adherens junction  homophilic cell adhesion via plasma membrane adhesion molecules  heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules  cell recognition  cell junction  cytoplasmic vesicle membrane  protein homodimerization activity  cell adhesion molecule binding  
Ontology : EGO-EBIreceptor activity  receptor binding  protein binding  nucleoplasm  plasma membrane  integral component of plasma membrane  cell-cell adherens junction  homophilic cell adhesion via plasma membrane adhesion molecules  heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules  cell recognition  cell junction  cytoplasmic vesicle membrane  protein homodimerization activity  cell adhesion molecule binding  
NDEx NetworkSMAGP
Atlas of Cancer Signalling NetworkSMAGP
Wikipedia pathwaysSMAGP
Orthology - Evolution
OrthoDB57228
GeneTree (enSembl)ENSG00000170545
Phylogenetic Trees/Animal Genes : TreeFamSMAGP
HOVERGENQ0VAQ4
HOGENOMQ0VAQ4
Homologs : HomoloGeneSMAGP
Homology/Alignments : Family Browser (UCSC)SMAGP
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSMAGP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SMAGP
dbVarSMAGP
ClinVarSMAGP
1000_GenomesSMAGP 
Exome Variant ServerSMAGP
ExAC (Exome Aggregation Consortium)SMAGP (select the gene name)
Genetic variants : HAPMAP57228
Genomic Variants (DGV)SMAGP [DGVbeta]
DECIPHERSMAGP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSMAGP 
Mutations
ICGC Data PortalSMAGP 
TCGA Data PortalSMAGP 
Broad Tumor PortalSMAGP
OASIS PortalSMAGP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSMAGP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSMAGP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SMAGP
DgiDB (Drug Gene Interaction Database)SMAGP
DoCM (Curated mutations)SMAGP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SMAGP (select a term)
intoGenSMAGP
Cancer3DSMAGP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSMAGP
Genetic Testing Registry SMAGP
NextProtQ0VAQ4 [Medical]
TSGene57228
GENETestsSMAGP
Target ValidationSMAGP
Huge Navigator SMAGP [HugePedia]
snp3D : Map Gene to Disease57228
BioCentury BCIQSMAGP
ClinGenSMAGP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57228
Chemical/Pharm GKB GenePA165513352
Clinical trialSMAGP
Miscellaneous
canSAR (ICR)SMAGP (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSMAGP
EVEXSMAGP
GoPubMedSMAGP
iHOPSMAGP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:38:25 CEST 2017

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