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SMARCA2 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2)

Identity

Alias (NCBI)BAF190
BIS
BRM
NCBRS
SNF2
SNF2L2
SNF2LA
SWI2
Sth1p
hBRM
hSNF2a
HGNC (Hugo) SMARCA2
HGNC Alias symbBAF190
hSNF2a
hBRM
Sth1p
SNF2LA
BRM
SNF2
SWI2
HGNC Alias namebrahma homolog
HGNC Previous nameSNF2L2
LocusID (NCBI) 6595
Atlas_Id 42331
Location 9p24.3  [Link to chromosome band 9p24]
Location_base_pair Starts at 2015347 and ends at 2193620 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FGFR1OP2 (12p11.23) / SMARCA2 (9p24.3)GFM1 (3q25.32) / SMARCA2 (9p24.3)KCNMA1 (10q22.3) / SMARCA2 (9p24.3)
PVT1 (8q24.21) / SMARCA2 (9p24.3)RFX3 (9p24.2) / SMARCA2 (9p24.3)SMARCA2 (9p24.3) / AC074212.3 ()
SMARCA2 (9p24.3) / DMRT1 (9p24.3)SMARCA2 (9p24.3) / SMARCA2 (9p24.3)TMEM181 (6q25.3) / SMARCA2 (9p24.3)
RFX3 9p24.2 / SMARCA2 9p24.3SMARCA2 9p24.3 AC074212.3SMARCA2 9p24.3 / DMRT1 9p24.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Leukemias implicated (Data extracted from papers in the Atlas) [ 4 ]
  t(1;9)(p35;p24) SMARCA2/ZNF362
t(1;9)(p35;p24) ZNF362/SMARCA2
t(9;9)(p24;p24) SMARCA2/VLDLR
t(9;12)(p24;p13) SMARCA2/ZNF384


External links

 

Nomenclature
HGNC (Hugo)SMARCA2   11098
LRG (Locus Reference Genomic)LRG_882
Cards
Entrez_Gene (NCBI)SMARCA2    SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
AliasesBAF190; BIS; BRM; NCBRS; 
SNF2; SNF2L2; SNF2LA; SWI2; Sth1p; hBRM; hSNF2a
GeneCards (Weizmann)SMARCA2
Ensembl hg19 (Hinxton)ENSG00000080503 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000080503 [Gene_View]  ENSG00000080503 [Sequence]  chr9:2015347-2193620 [Contig_View]  SMARCA2 [Vega]
ICGC DataPortalENSG00000080503
TCGA cBioPortalSMARCA2
AceView (NCBI)SMARCA2
Genatlas (Paris)SMARCA2
SOURCE (Princeton)SMARCA2
Genetics Home Reference (NIH)SMARCA2
Genomic and cartography
GoldenPath hg38 (UCSC)SMARCA2  -     chr9:2015347-2193620 +  9p24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SMARCA2  -     9p24.3   [Description]    (hg19-Feb_2009)
GoldenPathSMARCA2 - 9p24.3 [CytoView hg19]  SMARCA2 - 9p24.3 [CytoView hg38]
ImmunoBaseENSG00000080503
Genome Data Viewer NCBISMARCA2 [Mapview hg19]  
OMIM600014   601358   619293   
Gene and transcription
Genbank (Entrez)AK094076 AK296373 AK298045 AK299683 AK300093
RefSeq transcript (Entrez)NM_001289396 NM_001289397 NM_001289398 NM_001289399 NM_001289400 NM_003070 NM_139045
Consensus coding sequences : CCDS (NCBI)SMARCA2
Gene ExpressionSMARCA2 [ NCBI-GEO ]   SMARCA2 [ EBI - ARRAY_EXPRESS ]   SMARCA2 [ SEEK ]   SMARCA2 [ MEM ]
Gene Expression Viewer (FireBrowse)SMARCA2 [ Firebrowse - Broad ]
GenevisibleExpression of SMARCA2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6595
GTEX Portal (Tissue expression)SMARCA2
Human Protein AtlasENSG00000080503-SMARCA2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP51531   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP51531  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP51531
Catalytic activity : Enzyme3.6.4.- [ Enzyme-Expasy ]   3.6.4.-3.6.4.- [ IntEnz-EBI ]   3.6.4.- [ BRENDA ]   3.6.4.- [ KEGG ]   [ MEROPS ]
PhosPhoSitePlusP51531
Domaine pattern : Prosite (Expaxy)BROMODOMAIN_1 (PS00633)    BROMODOMAIN_2 (PS50014)    HELICASE_ATP_BIND_1 (PS51192)    HELICASE_CTER (PS51194)    HSA (PS51204)    QLQ (PS51666)   
Domains : Interpro (EBI)BRK_domain    BRK_sf    Bromodomain    Bromodomain-like_sf    Bromodomain_CS    Gln-Leu-Gln_QLQ    Helicase_ATP-bd    Helicase_C    HSA_dom    P-loop_NTPase    SMARCA2    SnAC    SNF2-like_sf    SNF2_N   
Domain families : Pfam (Sanger)BRK (PF07533)    Bromodomain (PF00439)    Helicase_C (PF00271)    HSA (PF07529)    QLQ (PF08880)    SnAC (PF14619)    SNF2_N (PF00176)   
Domain families : Pfam (NCBI)pfam07533    pfam00439    pfam00271    pfam07529    pfam08880    pfam14619    pfam00176   
Domain families : Smart (EMBL)BRK (SM00592)  BROMO (SM00297)  DEXDc (SM00487)  HELICc (SM00490)  HSA (SM00573)  QLQ (SM00951)  SnAC (SM01314)  
Conserved Domain (NCBI)SMARCA2
PDB (RSDB)2DAT    4QY4    5DKC    5DKH    6EG2    6EG3    6HAX    6HAY    6HAZ   
PDB Europe2DAT    4QY4    5DKC    5DKH    6EG2    6EG3    6HAX    6HAY    6HAZ   
PDB (PDBSum)2DAT    4QY4    5DKC    5DKH    6EG2    6EG3    6HAX    6HAY    6HAZ   
PDB (IMB)2DAT    4QY4    5DKC    5DKH    6EG2    6EG3    6HAX    6HAY    6HAZ   
Structural Biology KnowledgeBase2DAT    4QY4    5DKC    5DKH    6EG2    6EG3    6HAX    6HAY    6HAZ   
SCOP (Structural Classification of Proteins)2DAT    4QY4    5DKC    5DKH    6EG2    6EG3    6HAX    6HAY    6HAZ   
CATH (Classification of proteins structures)2DAT    4QY4    5DKC    5DKH    6EG2    6EG3    6HAX    6HAY    6HAZ   
SuperfamilyP51531
AlphaFold pdb e-kbP51531   
Human Protein Atlas [tissue]ENSG00000080503-SMARCA2 [tissue]
HPRD02483
Protein Interaction databases
DIP (DOE-UCLA)P51531
IntAct (EBI)P51531
BioGRIDSMARCA2
STRING (EMBL)SMARCA2
ZODIACSMARCA2
Ontologies - Pathways
QuickGOP51531
Ontology : AmiGOnegative regulation of transcription by RNA polymerase II  chromatin  transcription cis-regulatory region binding  DNA binding  chromatin binding  transcription coactivator activity  helicase activity  protein binding  ATP binding  nucleus  nucleus  nucleoplasm  nucleoplasm  chromatin remodeling  chromatin remodeling  regulation of transcription, DNA-templated  regulation of transcription by RNA polymerase II  spermatid development  nervous system development  ATPase, acting on DNA  ATPase, acting on DNA  negative regulation of cell population proliferation  SWI/SNF complex  hydrolase activity  negative regulation of cell growth  histone binding  ATP-dependent chromatin remodeling  intracellular membrane-bounded organelle  intermediate filament cytoskeleton  negative regulation of transcription, DNA-templated  positive regulation of transcription, DNA-templated  positive regulation of transcription, DNA-templated  positive regulation of transcription by RNA polymerase II  positive regulation of transcription by RNA polymerase II  positive regulation of transcription by RNA polymerase II  nucleosome-dependent ATPase activity  npBAF complex  nBAF complex  
Ontology : EGO-EBInegative regulation of transcription by RNA polymerase II  chromatin  transcription cis-regulatory region binding  DNA binding  chromatin binding  transcription coactivator activity  helicase activity  protein binding  ATP binding  nucleus  nucleus  nucleoplasm  nucleoplasm  chromatin remodeling  chromatin remodeling  regulation of transcription, DNA-templated  regulation of transcription by RNA polymerase II  spermatid development  nervous system development  ATPase, acting on DNA  ATPase, acting on DNA  negative regulation of cell population proliferation  SWI/SNF complex  hydrolase activity  negative regulation of cell growth  histone binding  ATP-dependent chromatin remodeling  intracellular membrane-bounded organelle  intermediate filament cytoskeleton  negative regulation of transcription, DNA-templated  positive regulation of transcription, DNA-templated  positive regulation of transcription, DNA-templated  positive regulation of transcription by RNA polymerase II  positive regulation of transcription by RNA polymerase II  positive regulation of transcription by RNA polymerase II  nucleosome-dependent ATPase activity  npBAF complex  nBAF complex  
NDEx NetworkSMARCA2
Atlas of Cancer Signalling NetworkSMARCA2
Wikipedia pathwaysSMARCA2
Orthology - Evolution
OrthoDB6595
GeneTree (enSembl)ENSG00000080503
Phylogenetic Trees/Animal Genes : TreeFamSMARCA2
Homologs : HomoloGeneSMARCA2
Homology/Alignments : Family Browser (UCSC)SMARCA2
Gene fusions - Rearrangements
Fusion : MitelmanRFX3/SMARCA2 [9p24.2/9p24.3]  
Fusion : MitelmanSMARCA2/DMRT1 [9p24.3/9p24.3]  
Fusion : QuiverSMARCA2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSMARCA2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SMARCA2
dbVarSMARCA2
ClinVarSMARCA2
MonarchSMARCA2
1000_GenomesSMARCA2 
Exome Variant ServerSMARCA2
GNOMAD BrowserENSG00000080503
Varsome BrowserSMARCA2
ACMGSMARCA2 variants
VarityP51531
Genomic Variants (DGV)SMARCA2 [DGVbeta]
DECIPHERSMARCA2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSMARCA2 
Mutations
ICGC Data PortalSMARCA2 
TCGA Data PortalSMARCA2 
Broad Tumor PortalSMARCA2
OASIS PortalSMARCA2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSMARCA2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSMARCA2
Mutations and Diseases : HGMDSMARCA2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSMARCA2
DgiDB (Drug Gene Interaction Database)SMARCA2
DoCM (Curated mutations)SMARCA2
CIViC (Clinical Interpretations of Variants in Cancer)SMARCA2
Cancer3DSMARCA2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600014    601358    619293   
Orphanet3183   
DisGeNETSMARCA2
MedgenSMARCA2
Genetic Testing Registry SMARCA2
NextProtP51531 [Medical]
GENETestsSMARCA2
Target ValidationSMARCA2
Huge Navigator SMARCA2 [HugePedia]
ClinGenSMARCA2 (curated)
Clinical trials, drugs, therapy
MyCancerGenomeSMARCA2
Protein Interactions : CTDSMARCA2
Pharm GKB GenePA35948
PharosP51531
Clinical trialSMARCA2
Miscellaneous
canSAR (ICR)SMARCA2
HarmonizomeSMARCA2
DataMed IndexSMARCA2
Probes
Litterature
PubMed241 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSMARCA2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:32:09 CEST 2021

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