Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SMARCA5-AS1 (SMARCA5 antisense RNA 1)

Identity

Alias_namesSMARCA5 antisense RNA 1 (non-protein coding)
Other alias-
HGNC (Hugo) SMARCA5-AS1
LocusID (NCBI) 100128055
Atlas_Id 73538
Location 4q31.21  [Link to chromosome band 4q31]
Location_base_pair Starts at 143513472 and ends at 143514837 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SMARCA5-AS1   39982
Cards
Entrez_Gene (NCBI)SMARCA5-AS1  100128055  SMARCA5 antisense RNA 1
Aliases
GeneCards (Weizmann)SMARCA5-AS1
Ensembl hg19 (Hinxton)ENSG00000245112 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000245112 [Gene_View]  chr4:143513472-143514837 [Contig_View]  SMARCA5-AS1 [Vega]
ICGC DataPortalENSG00000245112
TCGA cBioPortalSMARCA5-AS1
AceView (NCBI)SMARCA5-AS1
Genatlas (Paris)SMARCA5-AS1
WikiGenes100128055
SOURCE (Princeton)SMARCA5-AS1
Genetics Home Reference (NIH)SMARCA5-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)SMARCA5-AS1  -     chr4:143513472-143514837 -  4q31.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SMARCA5-AS1  -     4q31.21   [Description]    (hg19-Feb_2009)
EnsemblSMARCA5-AS1 - 4q31.21 [CytoView hg19]  SMARCA5-AS1 - 4q31.21 [CytoView hg38]
Mapping of homologs : NCBISMARCA5-AS1 [Mapview hg19]  SMARCA5-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK307172 HY014185
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SMARCA5-AS1
Cluster EST : UnigeneHs.707570 [ NCBI ]
CGAP (NCI)Hs.707570
Alternative Splicing GalleryENSG00000245112
Gene ExpressionSMARCA5-AS1 [ NCBI-GEO ]   SMARCA5-AS1 [ EBI - ARRAY_EXPRESS ]   SMARCA5-AS1 [ SEEK ]   SMARCA5-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)SMARCA5-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100128055
GTEX Portal (Tissue expression)SMARCA5-AS1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SMARCA5-AS1
DMDM Disease mutations100128055
Blocks (Seattle)SMARCA5-AS1
Human Protein AtlasENSG00000245112
Protein Interaction databases
FunCoupENSG00000245112
BioGRIDSMARCA5-AS1
STRING (EMBL)SMARCA5-AS1
ZODIACSMARCA5-AS1
Ontologies - Pathways
Huge Navigator SMARCA5-AS1 [HugePedia]
snp3D : Map Gene to Disease100128055
BioCentury BCIQSMARCA5-AS1
ClinGenSMARCA5-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100128055
Clinical trialSMARCA5-AS1
Miscellaneous
canSAR (ICR)SMARCA5-AS1 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineSMARCA5-AS1
EVEXSMARCA5-AS1
GoPubMedSMARCA5-AS1
iHOPSMARCA5-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:41:37 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.