| Nomenclature | | HGNC (Hugo) | SMARCA5 11101 |
| Entrez_Gene (NCBI) | SMARCA5 8467 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 |
| Cards | | GeneCards (Weizmann) | SMARCA5 |
| Ensembl (Hinxton) | ENSG00000153147 [Gene_View] chr4:144434616-144478642 [Contig_View] SMARCA5 [Vega] |
| AceView (NCBI) | SMARCA5 |
| Genatlas (Paris) | SMARCA5 |
| SOURCE (Stanford) | NM_003601 |
| Genomic and cartography | | GoldenPath (UCSC) | SMARCA5 - 4q31.21 chr4:144434616-144478642 + 4q31.21 [Description] (hg19-Feb_2009) |
| Ensembl | SMARCA5 - 4q31.21 [CytoView] |
| Mapping of homologs : NCBI | SMARCA5 [Mapview] |
| OMIM | 603375 |
| Gene and transcription |
| Genbank (Entrez) | AB010882 AF086544 AK123439 AK302841 AK308424 |
| RefSeq transcript (SRS) | NM_003601 |
| RefSeq transcript (Entrez) | NM_003601 |
| RefSeq genomic (SRS) | AC_000136 NC_000004 NC_018915 NT_016354 NW_001838921 NW_004078021 |
| RefSeq genomic (Entrez) | AC_000136 NC_000004 NC_018915 NT_016354 NW_001838921 NW_004078021 |
| Consensus coding sequences : CCDS (NCBI) | SMARCA5 |
| Cluster EST : Unigene | Hs.558422 [ SRS ] Hs.558422 [ NCBI ] |
| CGAP (NCI) | Hs.558422 |
| Alternative Splicing : Fast-db (Paris) | GSHG0022881 |
| Alternative Splicing Gallery | ENSG00000153147 |
| Gene Expression | SMARCA5 [ NCBI-GEO ] SMARCA5 [ EBI - ARRAY_EXPRESS ] |
| Protein : pattern, domain, 3D structure |
|---|
| UniProt/SwissProt | O60264 (SRS) O60264 (Uniprot) |
| NextProt | O60264 |
| With graphics : InterPro | O60264 |
| Splice isoforms : SwissVar | O60264(Swissvar) |
| Domaine pattern : Prosite (SRS) | DEAH_ATP_HELICASE (PS00690) HELICASE_ATP_BIND_1 (PS51192) HELICASE_CTER (PS51194) SANT (PS51293) |
| Domaine pattern : Prosite (Expaxy) | DEAH_ATP_HELICASE (PS00690) HELICASE_ATP_BIND_1 (PS51192) HELICASE_CTER (PS51194) SANT (PS51293) |
| Domains : Interpro (SRS) | DBINO Helicase_ATP-bd Helicase_C Homeodomain-like ISWI_HAND-dom SANT/Myb SANT_dom SLIDE SNF2_N |
| Domains : Interpro (EBI) | DBINO Helicase_ATP-bd Helicase_C Homeodomain-like ISWI_HAND-dom SANT/Myb SANT_dom SLIDE SNF2_N |
| Related proteins : CluSTr | O60264 |
| Domain families : Pfam (SRS) | DBINO (PF13892) HAND (PF09110) Helicase_C (PF00271) SLIDE (PF09111) SNF2_N (PF00176) |
| Domain families : Pfam (Sanger) | DBINO (PF13892) HAND (PF09110) Helicase_C (PF00271) SLIDE (PF09111) SNF2_N (PF00176) |
| Domain families : Pfam (NCBI) | pfam13892 pfam09110 pfam00271 pfam09111 pfam00176 |
| Domain families : Smart (EMBL) | DEXDc (SM00487) HELICc (SM00490) SANT (SM00717) |
| DMDM | 8467 |
| Blocks (Seattle) | O60264 |
| Human Protein Atlas | ENSG00000153147 |
| HPRD | 04538 |
| IPI | IPI00297211 IPI01013681 |
| Protein Interaction databases |
|---|
| DIP (DOE-UCLA) | O60264 |
| IntAct (EBI) | O60264 |
| FunCoup | ENSG00000153147 |
| REACTOME | SMARCA5 |
| Protein Interaction Database | 8467 |
| BioGRID | SMARCA5 |
| InParanoid | O60264 |
| Interologous Interaction database | O60264 |
| IntegromeDB | SMARCA5 |
| Polymorphism : SNP, mutations, diseases | | SNP Single Nucleotide Polymorphism (NCBI) | SMARCA5 |
| SNP (GeneSNP Utah) | SMARCA5 |
| SNP : HGBase | SMARCA5 |
| Genetic variants : HAPMAP | SMARCA5 |
| Somatic Mutations in Cancer : COSMIC | SMARCA5 |
| CONAN: Copy Number Analysis | SMARCA5 |
| Translocation Breakpoints in Cancer : TICdb | SMARCA5 |
| Mutations and Diseases : HGMD | SMARCA5 |
| OMIM | 603375 |
| GENETests | 603375 |
| Disease Genetic Association | SMARCA5 |
| Huge Navigator |
SMARCA5 [HugePedia] SMARCA5 [HugeCancerGEM] |
| Genomic Variants | SMARCA5 SMARCA5 [DGVbeta] |
| ClinVar | SMARCA5 |
| snp3D : Map Gene to Disease | 8467 |
| General knowledge |
|---|
| Homologs : HomoloGene | SMARCA5 |
| Homology/Alignments : Family Browser (UCSC) | SMARCA5 |
| Phylogenetic Trees/Animal Genes : TreeFam | SMARCA5 |
| Catalytic activity : Enzyme | 3.6.4.- [ Enzyme-Expasy ] 3.6.4.- [ Enzyme-SRS ] 3.6.4.- [ IntEnz-EBI ] 3.6.4.- [ BRENDA ] 3.6.4.- [ KEGG ] |
| Chemical/Protein Interactions : CTD | 8467 |
| Chemical/Pharm GKB Gene | PA35951 |
| Clinical trial | SMARCA5 |
| Cancer Resource (Charite) | ENSG00000153147 |
| Ontology : AmiGO | chromatin silencing at rDNA condensed chromosome DNA binding helicase activity protein binding ATP binding nucleus nucleoplasm chromatin silencing complex nucleolus ATP catabolic process double-strand break repair nucleosome assembly nucleosome assembly chromatin remodeling DNA-dependent transcription, initiation regulation of transcription from RNA polymerase II promoter embryo development nucleosome positioning NURF complex ATPase activity RSF complex nucleosome binding CENP-A containing nucleosome assembly at centromere histone binding ATP-dependent chromatin remodeling nuclear replication fork |
| Ontology : EGO-EBI | chromatin silencing at rDNA condensed chromosome DNA binding helicase activity protein binding ATP binding nucleus nucleoplasm chromatin silencing complex nucleolus ATP catabolic process double-strand break repair nucleosome assembly nucleosome assembly chromatin remodeling DNA-dependent transcription, initiation regulation of transcription from RNA polymerase II promoter embryo development nucleosome positioning NURF complex ATPase activity RSF complex nucleosome binding CENP-A containing nucleosome assembly at centromere histone binding ATP-dependent chromatin remodeling nuclear replication fork |
| Pathways : KEGG | Folate biosynthesisStarch and sucrose metabolism |
| Other databases | | Probes |
|---|
| Litterature | | PubMed | 90 Pubmed reference(s) in Entrez |
| PubGene | SMARCA5 |
| iHOP | SMARCA5 |
