Atlas of Genetics and Cytogenetics in Oncology and Haematology

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SMC1B (structural maintenance of chromosomes 1B)

Identity

Other namesSMC1BETA
SMC1L2
bK268H5
bK268H5.5
HGNC (Hugo) SMC1B
LocusID (NCBI) 27127
Location 22q13.31
Location_base_pair Starts at 45739945 and ends at 45809500 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)SMC1B   11112
Entrez_Gene (NCBI)SMC1B  27127  structural maintenance of chromosomes 1B
Cards
GeneCards (Weizmann)SMC1B
Ensembl (Hinxton)ENSG00000077935 [Gene_View]  chr22:45739945-45809500 [Contig_View]  SMC1B [Vega]
AceView (NCBI)SMC1B
Genatlas (Paris)SMC1B
SOURCE (Stanford)NM_148674
Genomic and cartography
GoldenPath (UCSC)SMC1B  -  22q13.31   chr22:45739945-45809500 -  22q13.31   [Description]    (hg19-Feb_2009)
EnsemblSMC1B - 22q13.31 [CytoView]
Mapping of homologs : NCBISMC1B [Mapview]
OMIM608685   
Gene and transcription
Genbank (Entrez)AJ504806 AK125736 AL704843 BC126208 BG194018
RefSeq transcript (SRS)NM_148674
RefSeq transcript (Entrez)NM_148674
RefSeq genomic (SRS)AC_000154 NC_000022 NC_018933 NT_011520 NW_001838751 NW_004078112
RefSeq genomic (Entrez)AC_000154 NC_000022 NC_018933 NT_011520 NW_001838751 NW_004078112
Consensus coding sequences : CCDS (NCBI)SMC1B
Cluster EST : UnigeneHs.334176 [ SRS ] Hs.334176 [ NCBI ]
CGAP (NCI)Hs.334176
Alternative Splicing : Fast-db (Paris)GSHG0020474
Alternative Splicing GalleryENSG00000077935
Gene ExpressionSMC1B [ NCBI-GEO ]   SMC1B [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NDV3 (SRS) Q8NDV3 (Uniprot)
NextProtQ8NDV3
With graphics : InterProQ8NDV3
Splice isoforms : SwissVarQ8NDV3(Swissvar)
Domains : Interpro (SRS)RecF/RecN/SMC    SMC    SMC_hinge   
Domains : Interpro (EBI)RecF/RecN/SMC    SMC    SMC_hinge   
Related proteins : CluSTrQ8NDV3
Domain families : Pfam (SRS)SMC_hinge (PF06470)    SMC_N (PF02463)   
Domain families : Pfam (Sanger)SMC_hinge (PF06470)    SMC_N (PF02463)   
Domain families : Pfam (NCBI)pfam06470    pfam02463   
Domain families : Smart (EMBL)SMC_hinge (SM00968)  
DMDM27127
Blocks (Seattle)Q8NDV3
Human Protein AtlasENSG00000077935
HPRD10564
IPIIPI00479260   IPI00807400   IPI00893258   
Protein Interaction databases
DIP (DOE-UCLA)Q8NDV3
IntAct (EBI)Q8NDV3
FunCoupENSG00000077935
REACTOMESMC1B
Protein Interaction Database27127
BioGRIDSMC1B
InParanoidQ8NDV3
Interologous Interaction database Q8NDV3
IntegromeDBSMC1B
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)SMC1B
SNP (GeneSNP Utah)SMC1B
SNP : HGBaseSMC1B
Genetic variants : HAPMAPSMC1B
Somatic Mutations in Cancer : COSMICSMC1B 
CONAN: Copy Number AnalysisSMC1B 
Mutations and Diseases : HGMDSMC1B
OMIM608685   
GENETests608685   
Disease Genetic AssociationSMC1B
Huge Navigator SMC1B [HugePedia]  SMC1B [HugeCancerGEM]
Genomic VariantsSMC1B  SMC1B [DGVbeta]
snp3D : Map Gene to Disease27127
General knowledge
Homologs : HomoloGeneSMC1B
Homology/Alignments : Family Browser (UCSC)SMC1B
Phylogenetic Trees/Animal Genes : TreeFamSMC1B
Chemical/Protein Interactions : CTD27127
Chemical/Pharm GKB GenePA35962
Clinical trialSMC1B
Cancer Resource (Charite)ENSG00000077935
Ontology : AmiGOchromosome, centromeric region  lateral element  DNA binding  ATP binding  DNA repair  DNA recombination  sister chromatid cohesion  meiosis  chromosome condensation  meiotic cohesin complex  
Ontology : EGO-EBIchromosome, centromeric region  lateral element  DNA binding  ATP binding  DNA repair  DNA recombination  sister chromatid cohesion  meiosis  chromosome condensation  meiotic cohesin complex  
Pathways : KEGGCell cycle
Other databases
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
PubGeneSMC1B
iHOPSMC1B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:26:49 CEST 2013
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