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SMC5-AS1 (SMC5 antisense RNA 1 (head to head))

Identity

Alias_symbol (synonym)MAMDC2-AS2
Other alias
HGNC (Hugo) SMC5-AS1
LocusID (NCBI) 100507299
Atlas_Id 73540
Location 9q21.12  [Link to chromosome band 9q21]
Location_base_pair Starts at 70216059 and ends at 70258874 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SMC5-AS1   48718
Cards
Entrez_Gene (NCBI)SMC5-AS1  100507299  SMC5 antisense RNA 1 (head to head)
AliasesMAMDC2-AS2
GeneCards (Weizmann)SMC5-AS1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr9:70216059-70258874 [Contig_View]  SMC5-AS1 [Vega]
TCGA cBioPortalSMC5-AS1
AceView (NCBI)SMC5-AS1
Genatlas (Paris)SMC5-AS1
WikiGenes100507299
SOURCE (Princeton)SMC5-AS1
Genetics Home Reference (NIH)SMC5-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)SMC5-AS1  -     chr9:70216059-70258874 -  9q21.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SMC5-AS1  -     9q21.12   [Description]    (hg19-Feb_2009)
EnsemblSMC5-AS1 - 9q21.12 [CytoView hg19]  SMC5-AS1 - 9q21.12 [CytoView hg38]
Mapping of homologs : NCBISMC5-AS1 [Mapview hg19]  SMC5-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI984490 AK124136 BC040840 CR936772
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SMC5-AS1
Cluster EST : UnigeneHs.734108 [ NCBI ]
CGAP (NCI)Hs.734108
Gene ExpressionSMC5-AS1 [ NCBI-GEO ]   SMC5-AS1 [ EBI - ARRAY_EXPRESS ]   SMC5-AS1 [ SEEK ]   SMC5-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)SMC5-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100507299
GTEX Portal (Tissue expression)SMC5-AS1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SMC5-AS1
DMDM Disease mutations100507299
Blocks (Seattle)SMC5-AS1
Protein Interaction databases
BioGRIDSMC5-AS1
STRING (EMBL)SMC5-AS1
ZODIACSMC5-AS1
Ontologies - Pathways
Huge Navigator SMC5-AS1 [HugePedia]
snp3D : Map Gene to Disease100507299
BioCentury BCIQSMC5-AS1
ClinGenSMC5-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100507299
Clinical trialSMC5-AS1
Miscellaneous
canSAR (ICR)SMC5-AS1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSMC5-AS1
EVEXSMC5-AS1
GoPubMedSMC5-AS1
iHOPSMC5-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Fri May 19 11:54:00 CEST 2017

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