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SMCO2 (single-pass membrane protein with coiled-coil domains 2)

Identity

Alias_namesC12orf70
chromosome 12 open reading frame 70
Alias_symbol (synonym)LOC341346
Other alias
HGNC (Hugo) SMCO2
LocusID (NCBI) 341346
Atlas_Id 73542
Location 12p11.23  [Link to chromosome band 12p11]
Location_base_pair Starts at 27466810 and ends at 27502185 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PPFIBP1 (12p11.23) / SMCO2 (12p11.23)PUS7L (12q12) / SMCO2 (12p11.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SMCO2   34448
Cards
Entrez_Gene (NCBI)SMCO2  341346  single-pass membrane protein with coiled-coil domains 2
AliasesC12orf70
GeneCards (Weizmann)SMCO2
Ensembl hg19 (Hinxton)ENSG00000165935 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165935 [Gene_View]  chr12:27466810-27502185 [Contig_View]  SMCO2 [Vega]
ICGC DataPortalENSG00000165935
TCGA cBioPortalSMCO2
AceView (NCBI)SMCO2
Genatlas (Paris)SMCO2
WikiGenes341346
SOURCE (Princeton)SMCO2
Genetics Home Reference (NIH)SMCO2
Genomic and cartography
GoldenPath hg38 (UCSC)SMCO2  -     chr12:27466810-27502185 +  12p11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SMCO2  -     12p11.23   [Description]    (hg19-Feb_2009)
EnsemblSMCO2 - 12p11.23 [CytoView hg19]  SMCO2 - 12p11.23 [CytoView hg38]
Mapping of homologs : NCBISMCO2 [Mapview hg19]  SMCO2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001145010
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SMCO2
Cluster EST : UnigeneHs.282121 [ NCBI ]
CGAP (NCI)Hs.282121
Alternative Splicing GalleryENSG00000165935
Gene ExpressionSMCO2 [ NCBI-GEO ]   SMCO2 [ EBI - ARRAY_EXPRESS ]   SMCO2 [ SEEK ]   SMCO2 [ MEM ]
Gene Expression Viewer (FireBrowse)SMCO2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)341346
GTEX Portal (Tissue expression)SMCO2
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NFE2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NFE2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NFE2
Splice isoforms : SwissVarA6NFE2
PhosPhoSitePlusA6NFE2
Domains : Interpro (EBI)SMCO2/5   
Domain families : Pfam (Sanger)TMCO5 (PF14992)   
Domain families : Pfam (NCBI)pfam14992   
Conserved Domain (NCBI)SMCO2
DMDM Disease mutations341346
Blocks (Seattle)SMCO2
SuperfamilyA6NFE2
Human Protein AtlasENSG00000165935
Peptide AtlasA6NFE2
IPIIPI00243275   IPI00973524   
Protein Interaction databases
DIP (DOE-UCLA)A6NFE2
IntAct (EBI)A6NFE2
FunCoupENSG00000165935
BioGRIDSMCO2
STRING (EMBL)SMCO2
ZODIACSMCO2
Ontologies - Pathways
QuickGOA6NFE2
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkSMCO2
Atlas of Cancer Signalling NetworkSMCO2
Wikipedia pathwaysSMCO2
Orthology - Evolution
OrthoDB341346
GeneTree (enSembl)ENSG00000165935
Phylogenetic Trees/Animal Genes : TreeFamSMCO2
HOVERGENA6NFE2
HOGENOMA6NFE2
Homologs : HomoloGeneSMCO2
Homology/Alignments : Family Browser (UCSC)SMCO2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSMCO2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SMCO2
dbVarSMCO2
ClinVarSMCO2
1000_GenomesSMCO2 
Exome Variant ServerSMCO2
ExAC (Exome Aggregation Consortium)SMCO2 (select the gene name)
Genetic variants : HAPMAP341346
Genomic Variants (DGV)SMCO2 [DGVbeta]
DECIPHERSMCO2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSMCO2 
Mutations
ICGC Data PortalSMCO2 
TCGA Data PortalSMCO2 
Broad Tumor PortalSMCO2
OASIS PortalSMCO2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSMCO2
BioMutasearch SMCO2
DgiDB (Drug Gene Interaction Database)SMCO2
DoCM (Curated mutations)SMCO2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SMCO2 (select a term)
intoGenSMCO2
Cancer3DSMCO2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSMCO2
Genetic Testing Registry SMCO2
NextProtA6NFE2 [Medical]
TSGene341346
GENETestsSMCO2
Target ValidationSMCO2
Huge Navigator SMCO2 [HugePedia]
snp3D : Map Gene to Disease341346
BioCentury BCIQSMCO2
ClinGenSMCO2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD341346
Chemical/Pharm GKB GenePA162378014
Clinical trialSMCO2
Miscellaneous
canSAR (ICR)SMCO2 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSMCO2
EVEXSMCO2
GoPubMedSMCO2
iHOPSMCO2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:41:38 CEST 2017

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