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SMCO3 (single-pass membrane protein with coiled-coil domains 3)

Identity

Alias_namesC12orf69
chromosome 12 open reading frame 69
Alias_symbol (synonym)LOC440087
Other alias
HGNC (Hugo) SMCO3
LocusID (NCBI) 440087
Atlas_Id 73543
Location 12p12.3  [Link to chromosome band 12p12]
Location_base_pair Starts at 14804650 and ends at 14814182 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ART4 (12p12.3) / SMCO3 (12p12.3)LARP4B (10p15.3) / SMCO3 (12p12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SMCO3   34401
Cards
Entrez_Gene (NCBI)SMCO3  440087  single-pass membrane protein with coiled-coil domains 3
AliasesC12orf69
GeneCards (Weizmann)SMCO3
Ensembl hg19 (Hinxton)ENSG00000179256 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000179256 [Gene_View]  chr12:14804650-14814182 [Contig_View]  SMCO3 [Vega]
ICGC DataPortalENSG00000179256
TCGA cBioPortalSMCO3
AceView (NCBI)SMCO3
Genatlas (Paris)SMCO3
WikiGenes440087
SOURCE (Princeton)SMCO3
Genetics Home Reference (NIH)SMCO3
Genomic and cartography
GoldenPath hg38 (UCSC)SMCO3  -     chr12:14804650-14814182 -  12p12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SMCO3  -     12p12.3   [Description]    (hg19-Feb_2009)
EnsemblSMCO3 - 12p12.3 [CytoView hg19]  SMCO3 - 12p12.3 [CytoView hg38]
Mapping of homologs : NCBISMCO3 [Mapview hg19]  SMCO3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK092637 BC132752 BC132754 BM696674 BU735185
RefSeq transcript (Entrez)NM_001013698
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SMCO3
Cluster EST : UnigeneHs.220931 [ NCBI ]
CGAP (NCI)Hs.220931
Alternative Splicing GalleryENSG00000179256
Gene ExpressionSMCO3 [ NCBI-GEO ]   SMCO3 [ EBI - ARRAY_EXPRESS ]   SMCO3 [ SEEK ]   SMCO3 [ MEM ]
Gene Expression Viewer (FireBrowse)SMCO3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)440087
GTEX Portal (Tissue expression)SMCO3
Protein : pattern, domain, 3D structure
UniProt/SwissProtA2RU48   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA2RU48  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA2RU48
Splice isoforms : SwissVarA2RU48
PhosPhoSitePlusA2RU48
Domains : Interpro (EBI)DUF4533   
Domain families : Pfam (Sanger)DUF4533 (PF15047)   
Domain families : Pfam (NCBI)pfam15047   
Conserved Domain (NCBI)SMCO3
DMDM Disease mutations440087
Blocks (Seattle)SMCO3
SuperfamilyA2RU48
Human Protein AtlasENSG00000179256
Peptide AtlasA2RU48
HPRD18442
IPIIPI00168012   
Protein Interaction databases
DIP (DOE-UCLA)A2RU48
IntAct (EBI)A2RU48
FunCoupENSG00000179256
BioGRIDSMCO3
STRING (EMBL)SMCO3
ZODIACSMCO3
Ontologies - Pathways
QuickGOA2RU48
Ontology : AmiGOprotein binding  integral component of membrane  
Ontology : EGO-EBIprotein binding  integral component of membrane  
NDEx NetworkSMCO3
Atlas of Cancer Signalling NetworkSMCO3
Wikipedia pathwaysSMCO3
Orthology - Evolution
OrthoDB440087
GeneTree (enSembl)ENSG00000179256
Phylogenetic Trees/Animal Genes : TreeFamSMCO3
HOVERGENA2RU48
HOGENOMA2RU48
Homologs : HomoloGeneSMCO3
Homology/Alignments : Family Browser (UCSC)SMCO3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSMCO3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SMCO3
dbVarSMCO3
ClinVarSMCO3
1000_GenomesSMCO3 
Exome Variant ServerSMCO3
ExAC (Exome Aggregation Consortium)SMCO3 (select the gene name)
Genetic variants : HAPMAP440087
Genomic Variants (DGV)SMCO3 [DGVbeta]
DECIPHERSMCO3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSMCO3 
Mutations
ICGC Data PortalSMCO3 
TCGA Data PortalSMCO3 
Broad Tumor PortalSMCO3
OASIS PortalSMCO3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSMCO3
BioMutasearch SMCO3
DgiDB (Drug Gene Interaction Database)SMCO3
DoCM (Curated mutations)SMCO3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SMCO3 (select a term)
intoGenSMCO3
Cancer3DSMCO3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSMCO3
Genetic Testing Registry SMCO3
NextProtA2RU48 [Medical]
TSGene440087
GENETestsSMCO3
Target ValidationSMCO3
Huge Navigator SMCO3 [HugePedia]
snp3D : Map Gene to Disease440087
BioCentury BCIQSMCO3
ClinGenSMCO3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD440087
Chemical/Pharm GKB GenePA162378005
Clinical trialSMCO3
Miscellaneous
canSAR (ICR)SMCO3 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSMCO3
EVEXSMCO3
GoPubMedSMCO3
iHOPSMCO3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:38:26 CEST 2017

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