SMCO4 (single-pass membrane protein with coiled-coil domains 4)

2014-11-01  

Identity

HGNC
SMCO4
LOCATION
11q21
LOCUSID
56935
ALIAS
C11orf75,FN5
FUSION GENES
Show Gene Fusions

Other Information

Locus ID:

NCBI: 56935
MIM: 609477
HGNC: 24810
Ensembl: ENSG00000166002

Variants:

dbSNP: 56935
ClinVar: 56935
TCGA: ENSG00000166002
COSMIC: SMCO4

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000166002ENST00000298966Q9NRQ5
ENSG00000166002ENST00000298966A0A024R3A3
ENSG00000166002ENST00000525141Q9NRQ5
ENSG00000166002ENST00000525141A0A024R3A3
ENSG00000166002ENST00000526869E9PSB8
ENSG00000166002ENST00000527149Q9NRQ5
ENSG00000166002ENST00000527149A0A024R3A3
ENSG00000166002ENST00000529714E9PQ76
ENSG00000166002ENST00000596676Q9NRQ5
ENSG00000166002ENST00000596676A0A024R3A3

Expression (GTEx)

0
10
20
30
40
50
60
70
80
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

Protein levels (Protein atlas)

Not detected
Low
Medium
High
cerebral cortex
cerebellum
hippocampus
caudate
thyroid gland
parathyroid gland
adrenal gland
nasopharynx
bronchus
lung
oral mucosa
salivary gland
esophagus
stomach 1
stomach 2
duodenum
small intestine
colon
rectum
liver
gallbladder
pancreas
kidney
urinary bladder
testis
epididymis
seminal vesicle
prostate
vagina
ovary
fallopian tube
endometrium 1
endometrium 2
cervix, uterine
placenta
breast
heart muscle
smooth muscle
skeletal muscle
soft tissue 1
soft tissue 2
adipose tissue
skin 1
skin 2
appendix
spleen
lymph node
tonsil
bone marrow

Citation

Dessen P

SMCO4 (single-pass membrane protein with coiled-coil domains 4)

Atlas Genet Cytogenet Oncol Haematol. 2014-11-01

Online version: http://atlasgeneticsoncology.org/gene/73544/smco4