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SMCO4 (single-pass membrane protein with coiled-coil domains 4)

Identity

Alias_namesC11orf75
chromosome 11 open reading frame 75
Alias_symbol (synonym)FN5
Other alias
HGNC (Hugo) SMCO4
LocusID (NCBI) 56935
Atlas_Id 73544
Location 11q21  [Link to chromosome band 11q21]
Location_base_pair Starts at 93211639 and ends at 93276546 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
SETBP1 (18q12.3) / SMCO4 (11q21)SMCO4 (11q21) / BCL7B (7q11.23)SMCO4 (11q21) / CHODL (21q21.1)
SMCO4 (11q21) / FAM129B (9q33.3)SMCO4 (11q21) / FDFT1 (8p23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SMCO4   24810
Cards
Entrez_Gene (NCBI)SMCO4  56935  single-pass membrane protein with coiled-coil domains 4
AliasesC11orf75; FN5
GeneCards (Weizmann)SMCO4
Ensembl hg19 (Hinxton)ENSG00000166002 [Gene_View]  chr11:93211639-93276546 [Contig_View]  SMCO4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000166002 [Gene_View]  chr11:93211639-93276546 [Contig_View]  SMCO4 [Vega]
ICGC DataPortalENSG00000166002
TCGA cBioPortalSMCO4
AceView (NCBI)SMCO4
Genatlas (Paris)SMCO4
WikiGenes56935
SOURCE (Princeton)SMCO4
Genetics Home Reference (NIH)SMCO4
Genomic and cartography
GoldenPath hg19 (UCSC)SMCO4  -     chr11:93211639-93276546 -  11q21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SMCO4  -     11q21   [Description]    (hg38-Dec_2013)
EnsemblSMCO4 - 11q21 [CytoView hg19]  SMCO4 - 11q21 [CytoView hg38]
Mapping of homologs : NCBISMCO4 [Mapview hg19]  SMCO4 [Mapview hg38]
OMIM609477   
Gene and transcription
Genbank (Entrez)AF197137 BC031564 HQ447966
RefSeq transcript (Entrez)NM_020179
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_033899 NW_004929380
Consensus coding sequences : CCDS (NCBI)SMCO4
Cluster EST : UnigeneHs.438064 [ NCBI ]
CGAP (NCI)Hs.438064
Alternative Splicing GalleryENSG00000166002
Gene ExpressionSMCO4 [ NCBI-GEO ]   SMCO4 [ EBI - ARRAY_EXPRESS ]   SMCO4 [ SEEK ]   SMCO4 [ MEM ]
Gene Expression Viewer (FireBrowse)SMCO4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56935
GTEX Portal (Tissue expression)SMCO4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NRQ5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NRQ5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NRQ5
Splice isoforms : SwissVarQ9NRQ5
PhosPhoSitePlusQ9NRQ5
Domains : Interpro (EBI)DUF4519   
Domain families : Pfam (Sanger)DUF4519 (PF15012)   
Domain families : Pfam (NCBI)pfam15012   
Conserved Domain (NCBI)SMCO4
DMDM Disease mutations56935
Blocks (Seattle)SMCO4
SuperfamilyQ9NRQ5
Human Protein AtlasENSG00000166002
Peptide AtlasQ9NRQ5
HPRD17008
IPIIPI00024602   IPI00983515   IPI00982340   
Protein Interaction databases
DIP (DOE-UCLA)Q9NRQ5
IntAct (EBI)Q9NRQ5
FunCoupENSG00000166002
BioGRIDSMCO4
STRING (EMBL)SMCO4
ZODIACSMCO4
Ontologies - Pathways
QuickGOQ9NRQ5
Ontology : AmiGOmolecular_function  protein binding  cellular_component  biological_process  integral component of membrane  
Ontology : EGO-EBImolecular_function  protein binding  cellular_component  biological_process  integral component of membrane  
NDEx NetworkSMCO4
Atlas of Cancer Signalling NetworkSMCO4
Wikipedia pathwaysSMCO4
Orthology - Evolution
OrthoDB56935
GeneTree (enSembl)ENSG00000166002
Phylogenetic Trees/Animal Genes : TreeFamSMCO4
HOVERGENQ9NRQ5
HOGENOMQ9NRQ5
Homologs : HomoloGeneSMCO4
Homology/Alignments : Family Browser (UCSC)SMCO4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSMCO4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SMCO4
dbVarSMCO4
ClinVarSMCO4
1000_GenomesSMCO4 
Exome Variant ServerSMCO4
ExAC (Exome Aggregation Consortium)SMCO4 (select the gene name)
Genetic variants : HAPMAP56935
Genomic Variants (DGV)SMCO4 [DGVbeta]
DECIPHER (Syndromes)11:93211639-93276546  ENSG00000166002
CONAN: Copy Number AnalysisSMCO4 
Mutations
ICGC Data PortalSMCO4 
TCGA Data PortalSMCO4 
Broad Tumor PortalSMCO4
OASIS PortalSMCO4 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSMCO4
BioMutasearch SMCO4
DgiDB (Drug Gene Interaction Database)SMCO4
DoCM (Curated mutations)SMCO4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SMCO4 (select a term)
intoGenSMCO4
Cancer3DSMCO4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609477   
Orphanet
MedgenSMCO4
Genetic Testing Registry SMCO4
NextProtQ9NRQ5 [Medical]
TSGene56935
GENETestsSMCO4
Huge Navigator SMCO4 [HugePedia]
snp3D : Map Gene to Disease56935
BioCentury BCIQSMCO4
ClinGenSMCO4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56935
Chemical/Pharm GKB GenePA144596494
Clinical trialSMCO4
Miscellaneous
canSAR (ICR)SMCO4 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSMCO4
EVEXSMCO4
GoPubMedSMCO4
iHOPSMCO4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 12:44:07 CET 2017

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