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SMCP (sperm mitochondria associated cysteine rich protein)

Identity

Alias_namesMCSP
mitochondrial capsule selenoprotein
sperm mitochondria-associated cysteine-rich protein
Other aliasHSMCSGEN1
MCS
HGNC (Hugo) SMCP
LocusID (NCBI) 4184
Atlas_Id 54827
Location 1q21.3  [Link to chromosome band 1q21]
Location_base_pair Starts at 152878322 and ends at 152885047 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BCL9 (1q21.2) / SMCP (1q21.3)SBNO2 (19p13.3) / SMCP (1q21.3)SMCP (1q21.3) / C9orf43 (9q32)
BCL9 1q21.2 / SMCP 1q21.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SMCP   6962
Cards
Entrez_Gene (NCBI)SMCP  4184  sperm mitochondria associated cysteine rich protein
AliasesHSMCSGEN1; MCS; MCSP
GeneCards (Weizmann)SMCP
Ensembl hg19 (Hinxton)ENSG00000163206 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163206 [Gene_View]  chr1:152878322-152885047 [Contig_View]  SMCP [Vega]
ICGC DataPortalENSG00000163206
TCGA cBioPortalSMCP
AceView (NCBI)SMCP
Genatlas (Paris)SMCP
WikiGenes4184
SOURCE (Princeton)SMCP
Genetics Home Reference (NIH)SMCP
Genomic and cartography
GoldenPath hg38 (UCSC)SMCP  -     chr1:152878322-152885047 +  1q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SMCP  -     1q21.3   [Description]    (hg19-Feb_2009)
EnsemblSMCP - 1q21.3 [CytoView hg19]  SMCP - 1q21.3 [CytoView hg38]
Mapping of homologs : NCBISMCP [Mapview hg19]  SMCP [Mapview hg38]
OMIM601148   
Gene and transcription
Genbank (Entrez)AK312020 BC014593 BC016744 DQ890788 DQ893944
RefSeq transcript (Entrez)NM_030663
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SMCP
Cluster EST : UnigeneHs.111850 [ NCBI ]
CGAP (NCI)Hs.111850
Alternative Splicing GalleryENSG00000163206
Gene ExpressionSMCP [ NCBI-GEO ]   SMCP [ EBI - ARRAY_EXPRESS ]   SMCP [ SEEK ]   SMCP [ MEM ]
Gene Expression Viewer (FireBrowse)SMCP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4184
GTEX Portal (Tissue expression)SMCP
Human Protein AtlasENSG00000163206-SMCP [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP49901   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP49901  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP49901
Splice isoforms : SwissVarP49901
PhosPhoSitePlusP49901
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SMCP
DMDM Disease mutations4184
Blocks (Seattle)SMCP
SuperfamilyP49901
Human Protein Atlas [tissue]ENSG00000163206-SMCP [tissue]
Peptide AtlasP49901
HPRD03093
IPIIPI00029053   
Protein Interaction databases
DIP (DOE-UCLA)P49901
IntAct (EBI)P49901
FunCoupENSG00000163206
BioGRIDSMCP
STRING (EMBL)SMCP
ZODIACSMCP
Ontologies - Pathways
QuickGOP49901
Ontology : AmiGOmolecular_function  protein binding  cytoplasm  mitochondrion  penetration of zona pellucida  flagellated sperm motility  mitochondrial membrane  
Ontology : EGO-EBImolecular_function  protein binding  cytoplasm  mitochondrion  penetration of zona pellucida  flagellated sperm motility  mitochondrial membrane  
NDEx NetworkSMCP
Atlas of Cancer Signalling NetworkSMCP
Wikipedia pathwaysSMCP
Orthology - Evolution
OrthoDB4184
GeneTree (enSembl)ENSG00000163206
Phylogenetic Trees/Animal Genes : TreeFamSMCP
HOVERGENP49901
HOGENOMP49901
Homologs : HomoloGeneSMCP
Homology/Alignments : Family Browser (UCSC)SMCP
Gene fusions - Rearrangements
Fusion : MitelmanBCL9/SMCP [1q21.2/1q21.3]  [t(1;1)(q21;q21)]  
Fusion: TCGA_MDACCBCL9 1q21.2 SMCP 1q21.3 BRCA
Tumor Fusion PortalSMCP
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSMCP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SMCP
dbVarSMCP
ClinVarSMCP
1000_GenomesSMCP 
Exome Variant ServerSMCP
ExAC (Exome Aggregation Consortium)ENSG00000163206
GNOMAD BrowserENSG00000163206
Genetic variants : HAPMAP4184
Genomic Variants (DGV)SMCP [DGVbeta]
DECIPHERSMCP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSMCP 
Mutations
ICGC Data PortalSMCP 
TCGA Data PortalSMCP 
Broad Tumor PortalSMCP
OASIS PortalSMCP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSMCP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSMCP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SMCP
DgiDB (Drug Gene Interaction Database)SMCP
DoCM (Curated mutations)SMCP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SMCP (select a term)
intoGenSMCP
Cancer3DSMCP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601148   
Orphanet
DisGeNETSMCP
MedgenSMCP
Genetic Testing Registry SMCP
NextProtP49901 [Medical]
TSGene4184
GENETestsSMCP
Target ValidationSMCP
Huge Navigator SMCP [HugePedia]
snp3D : Map Gene to Disease4184
BioCentury BCIQSMCP
ClinGenSMCP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4184
Chemical/Pharm GKB GenePA30710
Clinical trialSMCP
Miscellaneous
canSAR (ICR)SMCP (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSMCP
EVEXSMCP
GoPubMedSMCP
iHOPSMCP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:35:37 CET 2017

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