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SMCR2 (Smith-Magenis syndrome chromosome region, candidate 2 (non-protein coding))

Identity

Alias_namesSmith-Magenis syndrome chromosome region, candidate 2
Other aliasTCONS_00025215
HGNC (Hugo) SMCR2
LocusID (NCBI) 105371564
Atlas_Id 76826
Location 17p11.2  [Link to chromosome band 17p11]
Location_base_pair Starts at 17674026 and ends at 17677688 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SMCR2   17914
Cards
Entrez_Gene (NCBI)SMCR2  105371564  Smith-Magenis syndrome chromosome region, candidate 2 (non-protein coding)
AliasesTCONS_00025215
GeneCards (Weizmann)SMCR2
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr17:17674026-17677688 [Contig_View]  SMCR2 [Vega]
TCGA cBioPortalSMCR2
AceView (NCBI)SMCR2
Genatlas (Paris)SMCR2
WikiGenes105371564
SOURCE (Princeton)SMCR2
Genetics Home Reference (NIH)SMCR2
Genomic and cartography
GoldenPath hg38 (UCSC)SMCR2  -     chr17:17674026-17677688 -  17p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SMCR2  -     17p11.2   [Description]    (hg19-Feb_2009)
EnsemblSMCR2 - 17p11.2 [CytoView hg19]  SMCR2 - 17p11.2 [CytoView hg38]
Mapping of homologs : NCBISMCR2 [Mapview hg19]  SMCR2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI821738 AI821758 BX116483
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SMCR2
Cluster EST : UnigeneHs.369680 [ NCBI ]
CGAP (NCI)Hs.369680
Gene ExpressionSMCR2 [ NCBI-GEO ]   SMCR2 [ EBI - ARRAY_EXPRESS ]   SMCR2 [ SEEK ]   SMCR2 [ MEM ]
Gene Expression Viewer (FireBrowse)SMCR2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105371564
GTEX Portal (Tissue expression)SMCR2
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SMCR2
DMDM Disease mutations105371564
Blocks (Seattle)SMCR2
Protein Interaction databases
BioGRIDSMCR2
STRING (EMBL)SMCR2
ZODIACSMCR2
Ontologies - Pathways
Huge Navigator SMCR2 [HugePedia]
snp3D : Map Gene to Disease105371564
BioCentury BCIQSMCR2
ClinGenSMCR2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105371564
Clinical trialSMCR2
Miscellaneous
canSAR (ICR)SMCR2 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSMCR2
EVEXSMCR2
GoPubMedSMCR2
iHOPSMCR2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:28:00 CET 2017

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