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SMCR2 (Smith-Magenis syndrome chromosome region, candidate 2)

Identity

Alias (NCBI)TCONS_00025215
HGNC (Hugo) SMCR2
HGNC Previous nameSmith-Magenis syndrome chromosome region, candidate 2
LocusID (NCBI) 105371564
Atlas_Id 76826
Location 17p11.2  [Link to chromosome band 17p11]
Location_base_pair Starts at 17674026 and ends at 17677688 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)SMCR2   17914
Cards
Entrez_Gene (NCBI)SMCR2    Smith-Magenis syndrome chromosome region, candidate 2
AliasesTCONS_00025215
GeneCards (Weizmann)SMCR2
Ensembl hg19 (Hinxton)ENSG00000223979 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000223979 [Gene_View]  ENSG00000223979 [Sequence]  chr17:17674026-17677688 [Contig_View]  SMCR2 [Vega]
ICGC DataPortalENSG00000223979
TCGA cBioPortalSMCR2
AceView (NCBI)SMCR2
Genatlas (Paris)SMCR2
SOURCE (Princeton)SMCR2
Genetics Home Reference (NIH)SMCR2
Genomic and cartography
GoldenPath hg38 (UCSC)SMCR2  -     chr17:17674026-17677688 -  17p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SMCR2  -     17p11.2   [Description]    (hg19-Feb_2009)
GoldenPathSMCR2 - 17p11.2 [CytoView hg19]  SMCR2 - 17p11.2 [CytoView hg38]
ImmunoBaseENSG00000223979
Genome Data Viewer NCBISMCR2 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AI821738 AI821758 BX116483
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)SMCR2
Gene ExpressionSMCR2 [ NCBI-GEO ]   SMCR2 [ EBI - ARRAY_EXPRESS ]   SMCR2 [ SEEK ]   SMCR2 [ MEM ]
Gene Expression Viewer (FireBrowse)SMCR2 [ Firebrowse - Broad ]
GenevisibleExpression of SMCR2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)105371564
GTEX Portal (Tissue expression)SMCR2
Human Protein AtlasENSG00000223979-SMCR2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SMCR2
Human Protein Atlas [tissue]ENSG00000223979-SMCR2 [tissue]
Protein Interaction databases
BioGRIDSMCR2
STRING (EMBL)SMCR2
ZODIACSMCR2
Ontologies - Pathways
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSMCR2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 16:21:22 CEST 2021

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