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SMCR5 (Smith-Magenis syndrome chromosome region, candidate 5 (non-protein coding))

Identity

Alias_namesSmith-Magenis syndrome chromosome region, candidate 5
Alias_symbol (synonym)NCRNA00034
Other alias
HGNC (Hugo) SMCR5
LocusID (NCBI) 140771
Atlas_Id 73545
Location 17p11.2  [Link to chromosome band 17p11]
Location_base_pair Starts at 17776686 and ends at 17779529 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SMCR5   17918
Cards
Entrez_Gene (NCBI)SMCR5  140771  Smith-Magenis syndrome chromosome region, candidate 5 (non-protein coding)
AliasesNCRNA00034
GeneCards (Weizmann)SMCR5
Ensembl hg19 (Hinxton)ENSG00000226746 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000226746 [Gene_View]  chr17:17776686-17779529 [Contig_View]  SMCR5 [Vega]
ICGC DataPortalENSG00000226746
TCGA cBioPortalSMCR5
AceView (NCBI)SMCR5
Genatlas (Paris)SMCR5
WikiGenes140771
SOURCE (Princeton)SMCR5
Genetics Home Reference (NIH)SMCR5
Genomic and cartography
GoldenPath hg38 (UCSC)SMCR5  -     chr17:17776686-17779529 -  17p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SMCR5  -     17p11.2   [Description]    (hg19-Feb_2009)
EnsemblSMCR5 - 17p11.2 [CytoView hg19]  SMCR5 - 17p11.2 [CytoView hg38]
Mapping of homologs : NCBISMCR5 [Mapview hg19]  SMCR5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF467442
RefSeq transcript (Entrez)NM_144774
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SMCR5
Cluster EST : UnigeneHs.352643 [ NCBI ]
CGAP (NCI)Hs.352643
Alternative Splicing GalleryENSG00000226746
Gene ExpressionSMCR5 [ NCBI-GEO ]   SMCR5 [ EBI - ARRAY_EXPRESS ]   SMCR5 [ SEEK ]   SMCR5 [ MEM ]
Gene Expression Viewer (FireBrowse)SMCR5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)140771
GTEX Portal (Tissue expression)SMCR5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TEV8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TEV8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TEV8
Splice isoforms : SwissVarQ8TEV8
PhosPhoSitePlusQ8TEV8
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SMCR5
DMDM Disease mutations140771
Blocks (Seattle)SMCR5
SuperfamilyQ8TEV8
Human Protein AtlasENSG00000226746
Peptide AtlasQ8TEV8
IPIIPI00152862   
Protein Interaction databases
DIP (DOE-UCLA)Q8TEV8
IntAct (EBI)Q8TEV8
FunCoupENSG00000226746
BioGRIDSMCR5
STRING (EMBL)SMCR5
ZODIACSMCR5
Ontologies - Pathways
QuickGOQ8TEV8
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkSMCR5
Atlas of Cancer Signalling NetworkSMCR5
Wikipedia pathwaysSMCR5
Orthology - Evolution
OrthoDB140771
GeneTree (enSembl)ENSG00000226746
Phylogenetic Trees/Animal Genes : TreeFamSMCR5
HOVERGENQ8TEV8
HOGENOMQ8TEV8
Homologs : HomoloGeneSMCR5
Homology/Alignments : Family Browser (UCSC)SMCR5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSMCR5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SMCR5
dbVarSMCR5
ClinVarSMCR5
1000_GenomesSMCR5 
Exome Variant ServerSMCR5
ExAC (Exome Aggregation Consortium)SMCR5 (select the gene name)
Genetic variants : HAPMAP140771
Genomic Variants (DGV)SMCR5 [DGVbeta]
DECIPHERSMCR5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSMCR5 
Mutations
ICGC Data PortalSMCR5 
TCGA Data PortalSMCR5 
Broad Tumor PortalSMCR5
OASIS PortalSMCR5 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSMCR5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SMCR5
DgiDB (Drug Gene Interaction Database)SMCR5
DoCM (Curated mutations)SMCR5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SMCR5 (select a term)
intoGenSMCR5
Cancer3DSMCR5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSMCR5
Genetic Testing Registry SMCR5
NextProtQ8TEV8 [Medical]
TSGene140771
GENETestsSMCR5
Target ValidationSMCR5
Huge Navigator SMCR5 [HugePedia]
snp3D : Map Gene to Disease140771
BioCentury BCIQSMCR5
ClinGenSMCR5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD140771
Chemical/Pharm GKB GenePA38263
Clinical trialSMCR5
Miscellaneous
canSAR (ICR)SMCR5 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSMCR5
EVEXSMCR5
GoPubMedSMCR5
iHOPSMCR5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:41:39 CEST 2017

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