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SMEK3P (SMEK homolog 3, suppressor of mek1 (Dictyostelium) pseudogene)

Identity

Other aliasFLFL3P
smk1
HGNC (Hugo) SMEK3P
LocusID (NCBI) 139420
Atlas_Id 73548
Location Xp21.3  [Link to chromosome band Xp21]
Location_base_pair Starts at 27478328 and ends at 27481458 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SMEK3P   33146
Cards
Entrez_Gene (NCBI)SMEK3P  139420  SMEK homolog 3, suppressor of mek1 (Dictyostelium) pseudogene
AliasesFLFL3P; smk1
GeneCards (Weizmann)SMEK3P
Ensembl hg19 (Hinxton) [Gene_View]  chrX:27478328-27481458 [Contig_View]  SMEK3P [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chrX:27478328-27481458 [Contig_View]  SMEK3P [Vega]
TCGA cBioPortalSMEK3P
AceView (NCBI)SMEK3P
Genatlas (Paris)SMEK3P
WikiGenes139420
SOURCE (Princeton)SMEK3P
Genetics Home Reference (NIH)SMEK3P
Genomic and cartography
GoldenPath hg19 (UCSC)SMEK3P  -     chrX:27478328-27481458 -  Xp21.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SMEK3P  -     Xp21.3   [Description]    (hg38-Dec_2013)
EnsemblSMEK3P - Xp21.3 [CytoView hg19]  SMEK3P - Xp21.3 [CytoView hg38]
Mapping of homologs : NCBISMEK3P [Mapview hg19]  SMEK3P [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK057429 AK131475 DB022709 DB521738
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000023 NC_018934 NT_167197 NW_004929438
Consensus coding sequences : CCDS (NCBI)SMEK3P
Cluster EST : UnigeneHs.641864 [ NCBI ]
CGAP (NCI)Hs.641864
Gene ExpressionSMEK3P [ NCBI-GEO ]   SMEK3P [ EBI - ARRAY_EXPRESS ]   SMEK3P [ SEEK ]   SMEK3P [ MEM ]
Gene Expression Viewer (FireBrowse)SMEK3P [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)139420
GTEX Portal (Tissue expression)SMEK3P
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZMV5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZMV5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZMV5
Splice isoforms : SwissVarQ6ZMV5
PhosPhoSitePlusQ6ZMV5
Domains : Interpro (EBI)ARM-type_fold    DUF625   
Domain families : Pfam (Sanger)SMK-1 (PF04802)   
Domain families : Pfam (NCBI)pfam04802   
Conserved Domain (NCBI)SMEK3P
DMDM Disease mutations139420
Blocks (Seattle)SMEK3P
SuperfamilyQ6ZMV5
Peptide AtlasQ6ZMV5
HPRD09960
IPIIPI00900377   IPI00410731   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZMV5
IntAct (EBI)Q6ZMV5
BioGRIDSMEK3P
STRING (EMBL)SMEK3P
ZODIACSMEK3P
Ontologies - Pathways
QuickGOQ6ZMV5
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkSMEK3P
Atlas of Cancer Signalling NetworkSMEK3P
Wikipedia pathwaysSMEK3P
Orthology - Evolution
OrthoDB139420
Phylogenetic Trees/Animal Genes : TreeFamSMEK3P
HOVERGENQ6ZMV5
HOGENOMQ6ZMV5
Homologs : HomoloGeneSMEK3P
Homology/Alignments : Family Browser (UCSC)SMEK3P
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSMEK3P [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SMEK3P
dbVarSMEK3P
ClinVarSMEK3P
1000_GenomesSMEK3P 
Exome Variant ServerSMEK3P
ExAC (Exome Aggregation Consortium)SMEK3P (select the gene name)
Genetic variants : HAPMAP139420
Genomic Variants (DGV)SMEK3P [DGVbeta]
DECIPHER (Syndromes)X:27478328-27481458  
CONAN: Copy Number AnalysisSMEK3P 
Mutations
ICGC Data PortalSMEK3P 
TCGA Data PortalSMEK3P 
Broad Tumor PortalSMEK3P
OASIS PortalSMEK3P [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSMEK3P
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SMEK3P
DgiDB (Drug Gene Interaction Database)SMEK3P
DoCM (Curated mutations)SMEK3P (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SMEK3P (select a term)
intoGenSMEK3P
Cancer3DSMEK3P(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSMEK3P
Genetic Testing Registry SMEK3P
NextProtQ6ZMV5 [Medical]
TSGene139420
GENETestsSMEK3P
Huge Navigator SMEK3P [HugePedia]
snp3D : Map Gene to Disease139420
BioCentury BCIQSMEK3P
ClinGenSMEK3P
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD139420
Clinical trialSMEK3P
Miscellaneous
canSAR (ICR)SMEK3P (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSMEK3P
EVEXSMEK3P
GoPubMedSMEK3P
iHOPSMEK3P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:44:08 CET 2017

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