Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SMG1P1 (SMG1P1, nonsense mediated mRNA decay associated PI3K related kinase pseudogene 1)

Identity

Alias_namessmg-1 homolog, phosphatidylinositol 3-kinase-related kinase pseudogene 1
SMG1 pseudogene 1
Other alias-
HGNC (Hugo) SMG1P1
LocusID (NCBI) 641298
Atlas_Id 73549
Location 16p12.2  [Link to chromosome band 16p12]
Location_base_pair Starts at 22479091 and ends at 22491886 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SMG1P1   44186
Cards
Entrez_Gene (NCBI)SMG1P1  641298  SMG1P1, nonsense mediated mRNA decay associated PI3K related kinase pseudogene 1
Aliases
GeneCards (Weizmann)SMG1P1
Ensembl hg19 (Hinxton)ENSG00000237296 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000237296 [Gene_View]  chr16:22479091-22491886 [Contig_View]  SMG1P1 [Vega]
ICGC DataPortalENSG00000237296
TCGA cBioPortalSMG1P1
AceView (NCBI)SMG1P1
Genatlas (Paris)SMG1P1
WikiGenes641298
SOURCE (Princeton)SMG1P1
Genetics Home Reference (NIH)SMG1P1
Genomic and cartography
GoldenPath hg38 (UCSC)SMG1P1  -     chr16:22479091-22491886 +  16p12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SMG1P1  -     16p12.2   [Description]    (hg19-Feb_2009)
EnsemblSMG1P1 - 16p12.2 [CytoView hg19]  SMG1P1 - 16p12.2 [CytoView hg38]
Mapping of homologs : NCBISMG1P1 [Mapview hg19]  SMG1P1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK300040 AL834164 BC090929 BX647335
RefSeq transcript (Entrez)NM_199284
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SMG1P1
Cluster EST : UnigeneHs.552700 [ NCBI ]
CGAP (NCI)Hs.552700
Alternative Splicing GalleryENSG00000237296
Gene ExpressionSMG1P1 [ NCBI-GEO ]   SMG1P1 [ EBI - ARRAY_EXPRESS ]   SMG1P1 [ SEEK ]   SMG1P1 [ MEM ]
Gene Expression Viewer (FireBrowse)SMG1P1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)641298
GTEX Portal (Tissue expression)SMG1P1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SMG1P1
DMDM Disease mutations641298
Blocks (Seattle)SMG1P1
Human Protein AtlasENSG00000237296
IPIIPI00878277   IPI00168487   
Protein Interaction databases
FunCoupENSG00000237296
BioGRIDSMG1P1
STRING (EMBL)SMG1P1
ZODIACSMG1P1
Ontologies - Pathways
Huge Navigator SMG1P1 [HugePedia]
snp3D : Map Gene to Disease641298
BioCentury BCIQSMG1P1
ClinGenSMG1P1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD641298
Clinical trialSMG1P1
Miscellaneous
canSAR (ICR)SMG1P1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSMG1P1
EVEXSMG1P1
GoPubMedSMG1P1
iHOPSMG1P1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 11:54:02 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.