Atlas of Genetics and Cytogenetics in Oncology and Haematology

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SMG1P2 (SMG1 pseudogene 2)


Alias (NCBI)-
HGNC (Hugo) SMG1P2
HGNC Previous nameSMG1 pseudogene 2
LocusID (NCBI) 440354
Atlas_Id 73550
Location 16p11.2  [Link to chromosome band 16p11]
Location_base_pair Starts at 29545011 and ends at 29613717 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)


Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

HGNC (Hugo)SMG1P2   49859
Entrez_Gene (NCBI)SMG1P2    SMG1 pseudogene 2
GeneCards (Weizmann)SMG1P2
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr16:29545011-29613717 [Contig_View]  SMG1P2 [Vega]
TCGA cBioPortalSMG1P2
AceView (NCBI)SMG1P2
Genatlas (Paris)SMG1P2
SOURCE (Princeton)SMG1P2
Genetics Home Reference (NIH)SMG1P2
Genomic and cartography
GoldenPath hg38 (UCSC)SMG1P2  -     chr16:29545011-29613717 -  16p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SMG1P2  -     16p11.2   [Description]    (hg19-Feb_2009)
GoldenPathSMG1P2 - 16p11.2 [CytoView hg19]  SMG1P2 - 16p11.2 [CytoView hg38]
genome Data Viewer NCBISMG1P2 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AB055226 AK096982 AK097897 AK304513 AK316536
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SMG1P2
Gene ExpressionSMG1P2 [ NCBI-GEO ]   SMG1P2 [ EBI - ARRAY_EXPRESS ]   SMG1P2 [ SEEK ]   SMG1P2 [ MEM ]
Gene Expression Viewer (FireBrowse)SMG1P2 [ Firebrowse - Broad ]
GenevisibleExpression of SMG1P2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)440354
GTEX Portal (Tissue expression)SMG1P2
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SMG1P2
Blocks (Seattle)SMG1P2
Protein Interaction databases
Ontologies - Pathways
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 17:27:37 CET 2020

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