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SMG1P2 (SMG1P2, nonsense mediated mRNA decay associated PI3K related kinase pseudogene 2)

Identity

Alias_namesSMG1 pseudogene 2
Other alias-
HGNC (Hugo) SMG1P2
LocusID (NCBI) 440354
Atlas_Id 73550
Location 16p11.2  [Link to chromosome band 16p11]
Location_base_pair Starts at 29545011 and ends at 29595092 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SMG1P2   49859
Cards
Entrez_Gene (NCBI)SMG1P2  440354  SMG1P2, nonsense mediated mRNA decay associated PI3K related kinase pseudogene 2
Aliases
GeneCards (Weizmann)SMG1P2
Ensembl hg19 (Hinxton)ENSG00000205534 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205534 [Gene_View]  chr16:29545011-29595092 [Contig_View]  SMG1P2 [Vega]
ICGC DataPortalENSG00000205534
TCGA cBioPortalSMG1P2
AceView (NCBI)SMG1P2
Genatlas (Paris)SMG1P2
WikiGenes440354
SOURCE (Princeton)SMG1P2
Genetics Home Reference (NIH)SMG1P2
Genomic and cartography
GoldenPath hg38 (UCSC)SMG1P2  -     chr16:29545011-29595092 -  16p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SMG1P2  -     16p11.2   [Description]    (hg19-Feb_2009)
EnsemblSMG1P2 - 16p11.2 [CytoView hg19]  SMG1P2 - 16p11.2 [CytoView hg38]
Mapping of homologs : NCBISMG1P2 [Mapview hg19]  SMG1P2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB055226 AK096982 AK097897 AK304513 AK316536
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SMG1P2
Cluster EST : UnigeneHs.655267 [ NCBI ]
CGAP (NCI)Hs.655267
Alternative Splicing GalleryENSG00000205534
Gene ExpressionSMG1P2 [ NCBI-GEO ]   SMG1P2 [ EBI - ARRAY_EXPRESS ]   SMG1P2 [ SEEK ]   SMG1P2 [ MEM ]
Gene Expression Viewer (FireBrowse)SMG1P2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)440354
GTEX Portal (Tissue expression)SMG1P2
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SMG1P2
DMDM Disease mutations440354
Blocks (Seattle)SMG1P2
Human Protein AtlasENSG00000205534
Protein Interaction databases
FunCoupENSG00000205534
BioGRIDSMG1P2
STRING (EMBL)SMG1P2
ZODIACSMG1P2
Ontologies - Pathways
Huge Navigator SMG1P2 [HugePedia]
snp3D : Map Gene to Disease440354
BioCentury BCIQSMG1P2
ClinGenSMG1P2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD440354
Clinical trialSMG1P2
Miscellaneous
canSAR (ICR)SMG1P2 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSMG1P2
EVEXSMG1P2
GoPubMedSMG1P2
iHOPSMG1P2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:38:27 CEST 2017

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