Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SMG1P3 (SMG1P3, nonsense mediated mRNA decay associated PI3K related kinase pseudogene 3)

Identity

Alias_namesSMG1 pseudogene 3
Other alias-
HGNC (Hugo) SMG1P3
LocusID (NCBI) 100271836
Atlas_Id 73551
Location 16p12.2  [Link to chromosome band 16p12]
Location_base_pair Starts at 21446683 and ends at 21502281 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SMG1P3   49860
Cards
Entrez_Gene (NCBI)SMG1P3  100271836  SMG1P3, nonsense mediated mRNA decay associated PI3K related kinase pseudogene 3
Aliases
GeneCards (Weizmann)SMG1P3
Ensembl hg19 (Hinxton)ENSG00000180747 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000180747 [Gene_View]  chr16:21446683-21502281 [Contig_View]  SMG1P3 [Vega]
ICGC DataPortalENSG00000180747
TCGA cBioPortalSMG1P3
AceView (NCBI)SMG1P3
Genatlas (Paris)SMG1P3
WikiGenes100271836
SOURCE (Princeton)SMG1P3
Genetics Home Reference (NIH)SMG1P3
Genomic and cartography
GoldenPath hg38 (UCSC)SMG1P3  -     chr16:21446683-21502281 -  16p12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SMG1P3  -     16p12.2   [Description]    (hg19-Feb_2009)
EnsemblSMG1P3 - 16p12.2 [CytoView hg19]  SMG1P3 - 16p12.2 [CytoView hg38]
Mapping of homologs : NCBISMG1P3 [Mapview hg19]  SMG1P3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC055086
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SMG1P3
Cluster EST : UnigeneHs.726692 [ NCBI ]
CGAP (NCI)Hs.726692
Alternative Splicing GalleryENSG00000180747
Gene ExpressionSMG1P3 [ NCBI-GEO ]   SMG1P3 [ EBI - ARRAY_EXPRESS ]   SMG1P3 [ SEEK ]   SMG1P3 [ MEM ]
Gene Expression Viewer (FireBrowse)SMG1P3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100271836
GTEX Portal (Tissue expression)SMG1P3
Human Protein AtlasENSG00000180747-SMG1P3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SMG1P3
DMDM Disease mutations100271836
Blocks (Seattle)SMG1P3
Human Protein Atlas [tissue]ENSG00000180747-SMG1P3 [tissue]
Protein Interaction databases
FunCoupENSG00000180747
BioGRIDSMG1P3
STRING (EMBL)SMG1P3
ZODIACSMG1P3
Ontologies - Pathways
Huge Navigator SMG1P3 [HugePedia]
snp3D : Map Gene to Disease100271836
BioCentury BCIQSMG1P3
ClinGenSMG1P3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100271836
Clinical trialSMG1P3
Miscellaneous
canSAR (ICR)SMG1P3 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSMG1P3
EVEXSMG1P3
GoPubMedSMG1P3
iHOPSMG1P3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:28:01 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.