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SMG1P5 (SMG1P5, nonsense mediated mRNA decay associated PI3K related kinase pseudogene 5)

Identity

Alias_namesSMG1 pseudogene 5
Other alias-
HGNC (Hugo) SMG1P5
LocusID (NCBI) 595101
Atlas_Id 73552
Location 16p11.2  [Link to chromosome band 16p11]
Location_base_pair Starts at 30285018 and ends at 30335374 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SMG1P5   49862
Cards
Entrez_Gene (NCBI)SMG1P5  595101  SMG1P5, nonsense mediated mRNA decay associated PI3K related kinase pseudogene 5
Aliases
GeneCards (Weizmann)SMG1P5
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr16:30285018-30335374 [Contig_View]  SMG1P5 [Vega]
TCGA cBioPortalSMG1P5
AceView (NCBI)SMG1P5
Genatlas (Paris)SMG1P5
WikiGenes595101
SOURCE (Princeton)SMG1P5
Genetics Home Reference (NIH)SMG1P5
Genomic and cartography
GoldenPath hg38 (UCSC)SMG1P5  -     chr16:30285018-30335374 -  16p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SMG1P5  -     16p11.2   [Description]    (hg19-Feb_2009)
EnsemblSMG1P5 - 16p11.2 [CytoView hg19]  SMG1P5 - 16p11.2 [CytoView hg38]
Mapping of homologs : NCBISMG1P5 [Mapview hg19]  SMG1P5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA583959 AK289905 BC063703 CR627362
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SMG1P5
Cluster EST : UnigeneHs.655267 [ NCBI ]
CGAP (NCI)Hs.655267
Gene ExpressionSMG1P5 [ NCBI-GEO ]   SMG1P5 [ EBI - ARRAY_EXPRESS ]   SMG1P5 [ SEEK ]   SMG1P5 [ MEM ]
Gene Expression Viewer (FireBrowse)SMG1P5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)595101
GTEX Portal (Tissue expression)SMG1P5
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SMG1P5
DMDM Disease mutations595101
Blocks (Seattle)SMG1P5
IPIIPI00929412   
Protein Interaction databases
BioGRIDSMG1P5
STRING (EMBL)SMG1P5
ZODIACSMG1P5
Ontologies - Pathways
Huge Navigator SMG1P5 [HugePedia]
snp3D : Map Gene to Disease595101
BioCentury BCIQSMG1P5
ClinGenSMG1P5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD595101
Clinical trialSMG1P5
Miscellaneous
canSAR (ICR)SMG1P5 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSMG1P5
EVEXSMG1P5
GoPubMedSMG1P5
iHOPSMG1P5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:34:21 CET 2017

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