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SMG1P6 (SMG1P6, nonsense mediated mRNA decay associated PI3K related kinasepseudogene 6)

Identity

Alias_namesSMG1 pseudogene 6
Other alias-
HGNC (Hugo) SMG1P6
LocusID (NCBI) 100422558
Atlas_Id 78249
Location 16p11.2  [Link to chromosome band 16p11]
Location_base_pair Starts at 29425411 and ends at 29447026 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SMG1P6   49863
Cards
Entrez_Gene (NCBI)SMG1P6  100422558  SMG1P6, nonsense mediated mRNA decay associated PI3K related kinasepseudogene 6
Aliases
GeneCards (Weizmann)SMG1P6
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr16:29425411-29447026 [Contig_View]  SMG1P6 [Vega]
TCGA cBioPortalSMG1P6
AceView (NCBI)SMG1P6
Genatlas (Paris)SMG1P6
WikiGenes100422558
SOURCE (Princeton)SMG1P6
Genetics Home Reference (NIH)SMG1P6
Genomic and cartography
GoldenPath hg38 (UCSC)SMG1P6  -     chr16:29425411-29447026 -  16p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SMG1P6  -     16p11.2   [Description]    (hg19-Feb_2009)
EnsemblSMG1P6 - 16p11.2 [CytoView hg19]  SMG1P6 - 16p11.2 [CytoView hg38]
Mapping of homologs : NCBISMG1P6 [Mapview hg19]  SMG1P6 [Mapview hg38]
Gene and transcription
Genbank (Entrez)DA126854
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SMG1P6
Cluster EST : UnigeneHs.552700 [ NCBI ]
CGAP (NCI)Hs.552700
Gene ExpressionSMG1P6 [ NCBI-GEO ]   SMG1P6 [ EBI - ARRAY_EXPRESS ]   SMG1P6 [ SEEK ]   SMG1P6 [ MEM ]
Gene Expression Viewer (FireBrowse)SMG1P6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100422558
GTEX Portal (Tissue expression)SMG1P6
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SMG1P6
DMDM Disease mutations100422558
Blocks (Seattle)SMG1P6
Protein Interaction databases
BioGRIDSMG1P6
STRING (EMBL)SMG1P6
ZODIACSMG1P6
Ontologies - Pathways
Huge Navigator SMG1P6 [HugePedia]
snp3D : Map Gene to Disease100422558
BioCentury BCIQSMG1P6
ClinGenSMG1P6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100422558
Clinical trialSMG1P6
Miscellaneous
canSAR (ICR)SMG1P6 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSMG1P6
EVEXSMG1P6
GoPubMedSMG1P6
iHOPSMG1P6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:41:41 CEST 2017

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