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SMG6-IT1 (SMG6 intronic transcript 1)

Identity

Alias_namesC17orf6
chromosome 17 open reading frame 6
SMG6 intronic transcript 1 (non-protein coding)
Other alias
HGNC (Hugo) SMG6-IT1
LocusID (NCBI) 53400
Atlas_Id 73555
Location 17p13.3  [Link to chromosome band 17p13]
Location_base_pair Starts at 2235713 and ends at 2236086 bp from pter ( according to hg38-Dec_2013)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)SMG6-IT1   1220
Cards
Entrez_Gene (NCBI)SMG6-IT1  53400  SMG6 intronic transcript 1
AliasesC17orf6
GeneCards (Weizmann)SMG6-IT1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr17:2235713-2236086 [Contig_View]  SMG6-IT1 [Vega]
TCGA cBioPortalSMG6-IT1
AceView (NCBI)SMG6-IT1
Genatlas (Paris)SMG6-IT1
WikiGenes53400
SOURCE (Princeton)SMG6-IT1
Genetics Home Reference (NIH)SMG6-IT1
Genomic and cartography
GoldenPath hg38 (UCSC)SMG6-IT1  -     chr17:2235713-2236086 -  17p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SMG6-IT1  -     17p13.3   [Description]    (hg19-Feb_2009)
EnsemblSMG6-IT1 - 17p13.3 [CytoView hg19]  SMG6-IT1 - 17p13.3 [CytoView hg38]
Mapping of homologs : NCBISMG6-IT1 [Mapview hg19]  SMG6-IT1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ272176 AJ276246
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SMG6-IT1
Gene ExpressionSMG6-IT1 [ NCBI-GEO ]   SMG6-IT1 [ EBI - ARRAY_EXPRESS ]   SMG6-IT1 [ SEEK ]   SMG6-IT1 [ MEM ]
Gene Expression Viewer (FireBrowse)SMG6-IT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)53400
GTEX Portal (Tissue expression)SMG6-IT1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SMG6-IT1
DMDM Disease mutations53400
Blocks (Seattle)SMG6-IT1
Protein Interaction databases
BioGRIDSMG6-IT1
STRING (EMBL)SMG6-IT1
ZODIACSMG6-IT1
Ontologies - Pathways
Huge Navigator SMG6-IT1 [HugePedia]
snp3D : Map Gene to Disease53400
BioCentury BCIQSMG6-IT1
ClinGenSMG6-IT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD53400
Chemical/Pharm GKB GenePA25589
Clinical trialSMG6-IT1
Miscellaneous
canSAR (ICR)SMG6-IT1 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineSMG6-IT1
EVEXSMG6-IT1
GoPubMedSMG6-IT1
iHOPSMG6-IT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 11:54:03 CEST 2017

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