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SMIM10 (small integral membrane protein 10)

Identity

Alias_namesCXorf69
chromosome X open reading frame 69
Other alias
HGNC (Hugo) SMIM10
LocusID (NCBI) 644538
Atlas_Id 73561
Location Xq26.3  [Link to chromosome band Xq26]
Location_base_pair Starts at 134990938 and ends at 134992473 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SMIM10   41913
Cards
Entrez_Gene (NCBI)SMIM10  644538  small integral membrane protein 10
AliasesCXorf69
GeneCards (Weizmann)SMIM10
Ensembl hg19 (Hinxton)ENSG00000184785 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184785 [Gene_View]  chrX:134990938-134992473 [Contig_View]  SMIM10 [Vega]
ICGC DataPortalENSG00000184785
TCGA cBioPortalSMIM10
AceView (NCBI)SMIM10
Genatlas (Paris)SMIM10
WikiGenes644538
SOURCE (Princeton)SMIM10
Genetics Home Reference (NIH)SMIM10
Genomic and cartography
GoldenPath hg38 (UCSC)SMIM10  -     chrX:134990938-134992473 +  Xq26.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SMIM10  -     Xq26.3   [Description]    (hg19-Feb_2009)
EnsemblSMIM10 - Xq26.3 [CytoView hg19]  SMIM10 - Xq26.3 [CytoView hg38]
Mapping of homologs : NCBISMIM10 [Mapview hg19]  SMIM10 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA630048 BC008642 BQ016562
RefSeq transcript (Entrez)NM_001163438
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SMIM10
Cluster EST : UnigeneHs.42239 [ NCBI ]
CGAP (NCI)Hs.42239
Alternative Splicing GalleryENSG00000184785
Gene ExpressionSMIM10 [ NCBI-GEO ]   SMIM10 [ EBI - ARRAY_EXPRESS ]   SMIM10 [ SEEK ]   SMIM10 [ MEM ]
Gene Expression Viewer (FireBrowse)SMIM10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)644538
GTEX Portal (Tissue expression)SMIM10
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96HG1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96HG1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96HG1
Splice isoforms : SwissVarQ96HG1
PhosPhoSitePlusQ96HG1
Domains : Interpro (EBI)SMIM10   
Domain families : Pfam (Sanger)DUF4560 (PF15118)   
Domain families : Pfam (NCBI)pfam15118   
Conserved Domain (NCBI)SMIM10
DMDM Disease mutations644538
Blocks (Seattle)SMIM10
SuperfamilyQ96HG1
Human Protein AtlasENSG00000184785
Peptide AtlasQ96HG1
IPIIPI00063078   
Protein Interaction databases
DIP (DOE-UCLA)Q96HG1
IntAct (EBI)Q96HG1
FunCoupENSG00000184785
BioGRIDSMIM10
STRING (EMBL)SMIM10
ZODIACSMIM10
Ontologies - Pathways
QuickGOQ96HG1
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkSMIM10
Atlas of Cancer Signalling NetworkSMIM10
Wikipedia pathwaysSMIM10
Orthology - Evolution
OrthoDB644538
GeneTree (enSembl)ENSG00000184785
Phylogenetic Trees/Animal Genes : TreeFamSMIM10
HOVERGENQ96HG1
HOGENOMQ96HG1
Homologs : HomoloGeneSMIM10
Homology/Alignments : Family Browser (UCSC)SMIM10
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSMIM10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SMIM10
dbVarSMIM10
ClinVarSMIM10
1000_GenomesSMIM10 
Exome Variant ServerSMIM10
ExAC (Exome Aggregation Consortium)SMIM10 (select the gene name)
Genetic variants : HAPMAP644538
Genomic Variants (DGV)SMIM10 [DGVbeta]
DECIPHERSMIM10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSMIM10 
Mutations
ICGC Data PortalSMIM10 
TCGA Data PortalSMIM10 
Broad Tumor PortalSMIM10
OASIS PortalSMIM10 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSMIM10
BioMutasearch SMIM10
DgiDB (Drug Gene Interaction Database)SMIM10
DoCM (Curated mutations)SMIM10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SMIM10 (select a term)
intoGenSMIM10
Cancer3DSMIM10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSMIM10
Genetic Testing Registry SMIM10
NextProtQ96HG1 [Medical]
TSGene644538
GENETestsSMIM10
Target ValidationSMIM10
Huge Navigator SMIM10 [HugePedia]
snp3D : Map Gene to Disease644538
BioCentury BCIQSMIM10
ClinGenSMIM10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD644538
Chemical/Pharm GKB GenePA166049079
Clinical trialSMIM10
Miscellaneous
canSAR (ICR)SMIM10 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSMIM10
EVEXSMIM10
GoPubMedSMIM10
iHOPSMIM10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:41:42 CEST 2017

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