Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SMIM10L1 (small integral membrane protein 10 like 1)

Identity

Other alias-
HGNC (Hugo) SMIM10L1
LocusID (NCBI) 100129361
Atlas_Id 77369
Location 12p13.2  [Link to chromosome band 12p13]
Location_base_pair Starts at 11171181 and ends at 11176020 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SMIM10L1   49847
Cards
Entrez_Gene (NCBI)SMIM10L1  100129361  small integral membrane protein 10 like 1
Aliases
GeneCards (Weizmann)SMIM10L1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr12:11171181-11176020 [Contig_View]  SMIM10L1 [Vega]
TCGA cBioPortalSMIM10L1
AceView (NCBI)SMIM10L1
Genatlas (Paris)SMIM10L1
WikiGenes100129361
SOURCE (Princeton)SMIM10L1
Genetics Home Reference (NIH)SMIM10L1
Genomic and cartography
GoldenPath hg38 (UCSC)SMIM10L1  -     chr12:11171181-11176020 +  12p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SMIM10L1  -     12p13.2   [Description]    (hg19-Feb_2009)
EnsemblSMIM10L1 - 12p13.2 [CytoView hg19]  SMIM10L1 - 12p13.2 [CytoView hg38]
Mapping of homologs : NCBISMIM10L1 [Mapview hg19]  SMIM10L1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BG680492 BX338800 CX164259
RefSeq transcript (Entrez)NM_001271592
RefSeq genomic (Entrez)NC_000012 NC_018923 NG_032701 NT_187658 NW_003571050
Consensus coding sequences : CCDS (NCBI)SMIM10L1
Cluster EST : UnigeneHs.521817 [ NCBI ]
CGAP (NCI)Hs.521817
Gene ExpressionSMIM10L1 [ NCBI-GEO ]   SMIM10L1 [ EBI - ARRAY_EXPRESS ]   SMIM10L1 [ SEEK ]   SMIM10L1 [ MEM ]
Gene Expression Viewer (FireBrowse)SMIM10L1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100129361
GTEX Portal (Tissue expression)SMIM10L1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0DMW3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0DMW3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0DMW3
Splice isoforms : SwissVarP0DMW3
PhosPhoSitePlusP0DMW3
Domains : Interpro (EBI)SMIM10   
Domain families : Pfam (Sanger)DUF4560 (PF15118)   
Domain families : Pfam (NCBI)pfam15118   
Conserved Domain (NCBI)SMIM10L1
DMDM Disease mutations100129361
Blocks (Seattle)SMIM10L1
SuperfamilyP0DMW3
Peptide AtlasP0DMW3
Protein Interaction databases
DIP (DOE-UCLA)P0DMW3
IntAct (EBI)P0DMW3
BioGRIDSMIM10L1
STRING (EMBL)SMIM10L1
ZODIACSMIM10L1
Ontologies - Pathways
QuickGOP0DMW3
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkSMIM10L1
Atlas of Cancer Signalling NetworkSMIM10L1
Wikipedia pathwaysSMIM10L1
Orthology - Evolution
OrthoDB100129361
Phylogenetic Trees/Animal Genes : TreeFamSMIM10L1
HOVERGENP0DMW3
HOGENOMP0DMW3
Homologs : HomoloGeneSMIM10L1
Homology/Alignments : Family Browser (UCSC)SMIM10L1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSMIM10L1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SMIM10L1
dbVarSMIM10L1
ClinVarSMIM10L1
1000_GenomesSMIM10L1 
Exome Variant ServerSMIM10L1
ExAC (Exome Aggregation Consortium)SMIM10L1 (select the gene name)
Genetic variants : HAPMAP100129361
Genomic Variants (DGV)SMIM10L1 [DGVbeta]
DECIPHERSMIM10L1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSMIM10L1 
Mutations
ICGC Data PortalSMIM10L1 
TCGA Data PortalSMIM10L1 
Broad Tumor PortalSMIM10L1
OASIS PortalSMIM10L1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSMIM10L1
BioMutasearch SMIM10L1
DgiDB (Drug Gene Interaction Database)SMIM10L1
DoCM (Curated mutations)SMIM10L1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SMIM10L1 (select a term)
intoGenSMIM10L1
Cancer3DSMIM10L1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSMIM10L1
Genetic Testing Registry SMIM10L1
NextProtP0DMW3 [Medical]
TSGene100129361
GENETestsSMIM10L1
Target ValidationSMIM10L1
Huge Navigator SMIM10L1 [HugePedia]
snp3D : Map Gene to Disease100129361
BioCentury BCIQSMIM10L1
ClinGenSMIM10L1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100129361
Clinical trialSMIM10L1
Miscellaneous
canSAR (ICR)SMIM10L1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSMIM10L1
EVEXSMIM10L1
GoPubMedSMIM10L1
iHOPSMIM10L1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:38:29 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.