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SMIM10L2A (small integral membrane protein 10 like 2A)

Identity

Alias_namesNCRNA00086
LINC00086
non-protein coding RNA 86
long intergenic non-protein coding RNA 86
Alias_symbol (synonym)MGC39606
LED
Other aliasLINC0086
HGNC (Hugo) SMIM10L2A
LocusID (NCBI) 399668
Atlas_Id 76733
Location Xq26.3  [Link to chromosome band Xq26]
Location_base_pair Starts at 135421933 and ends at 135428074 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SMIM10L2A   34499
Cards
Entrez_Gene (NCBI)SMIM10L2A  399668  small integral membrane protein 10 like 2A
AliasesLED; LINC00086; LINC0086; NCRNA00086
GeneCards (Weizmann)SMIM10L2A
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chrX:135421933-135428074 [Contig_View]  SMIM10L2A [Vega]
TCGA cBioPortalSMIM10L2A
AceView (NCBI)SMIM10L2A
Genatlas (Paris)SMIM10L2A
WikiGenes399668
SOURCE (Princeton)SMIM10L2A
Genetics Home Reference (NIH)SMIM10L2A
Genomic and cartography
GoldenPath hg38 (UCSC)SMIM10L2A  -     chrX:135421933-135428074 +  Xq26.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SMIM10L2A  -     Xq26.3   [Description]    (hg19-Feb_2009)
EnsemblSMIM10L2A - Xq26.3 [CytoView hg19]  SMIM10L2A - Xq26.3 [CytoView hg38]
Mapping of homologs : NCBISMIM10L2A [Mapview hg19]  SMIM10L2A [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC030620 BC051704 BP397928 BU730306 CA389121
RefSeq transcript (Entrez)NM_203306
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SMIM10L2A
Cluster EST : UnigeneHs.720523 [ NCBI ]
CGAP (NCI)Hs.720523
Gene ExpressionSMIM10L2A [ NCBI-GEO ]   SMIM10L2A [ EBI - ARRAY_EXPRESS ]   SMIM10L2A [ SEEK ]   SMIM10L2A [ MEM ]
Gene Expression Viewer (FireBrowse)SMIM10L2A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)399668
GTEX Portal (Tissue expression)SMIM10L2A
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0DMW4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0DMW4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0DMW4
Splice isoforms : SwissVarP0DMW4
PhosPhoSitePlusP0DMW4
Domains : Interpro (EBI)SMIM10   
Domain families : Pfam (Sanger)DUF4560 (PF15118)   
Domain families : Pfam (NCBI)pfam15118   
Conserved Domain (NCBI)SMIM10L2A
DMDM Disease mutations399668
Blocks (Seattle)SMIM10L2A
SuperfamilyP0DMW4
Peptide AtlasP0DMW4
HPRD14610
IPIIPI00328812   
Protein Interaction databases
DIP (DOE-UCLA)P0DMW4
IntAct (EBI)P0DMW4
BioGRIDSMIM10L2A
STRING (EMBL)SMIM10L2A
ZODIACSMIM10L2A
Ontologies - Pathways
QuickGOP0DMW4
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkSMIM10L2A
Atlas of Cancer Signalling NetworkSMIM10L2A
Wikipedia pathwaysSMIM10L2A
Orthology - Evolution
OrthoDB399668
Phylogenetic Trees/Animal Genes : TreeFamSMIM10L2A
HOVERGENP0DMW4
HOGENOMP0DMW4
Homologs : HomoloGeneSMIM10L2A
Homology/Alignments : Family Browser (UCSC)SMIM10L2A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSMIM10L2A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SMIM10L2A
dbVarSMIM10L2A
ClinVarSMIM10L2A
1000_GenomesSMIM10L2A 
Exome Variant ServerSMIM10L2A
ExAC (Exome Aggregation Consortium)SMIM10L2A (select the gene name)
Genetic variants : HAPMAP399668
Genomic Variants (DGV)SMIM10L2A [DGVbeta]
DECIPHERSMIM10L2A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSMIM10L2A 
Mutations
ICGC Data PortalSMIM10L2A 
TCGA Data PortalSMIM10L2A 
Broad Tumor PortalSMIM10L2A
OASIS PortalSMIM10L2A [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSMIM10L2A
BioMutasearch SMIM10L2A
DgiDB (Drug Gene Interaction Database)SMIM10L2A
DoCM (Curated mutations)SMIM10L2A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SMIM10L2A (select a term)
intoGenSMIM10L2A
Cancer3DSMIM10L2A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSMIM10L2A
Genetic Testing Registry SMIM10L2A
NextProtP0DMW4 [Medical]
TSGene399668
GENETestsSMIM10L2A
Target ValidationSMIM10L2A
Huge Navigator SMIM10L2A [HugePedia]
snp3D : Map Gene to Disease399668
BioCentury BCIQSMIM10L2A
ClinGenSMIM10L2A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD399668
Chemical/Pharm GKB GenePA164723613
Clinical trialSMIM10L2A
Miscellaneous
canSAR (ICR)SMIM10L2A (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSMIM10L2A
EVEXSMIM10L2A
GoPubMedSMIM10L2A
iHOPSMIM10L2A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:41:43 CEST 2017

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