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SMIM10L2B (small integral membrane protein 10 like 2B)

Identity

Alias_namesNCRNA00087
LINC00087
non-protein coding RNA 87
long intergenic non-protein coding RNA 87
Alias_symbol (synonym)RP11-85L21.2
Other alias
HGNC (Hugo) SMIM10L2B
LocusID (NCBI) 644596
Atlas_Id 77509
Location Xq26.3  [Link to chromosome band Xq26]
Location_base_pair Starts at 135094985 and ends at 135098634 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SMIM10L2B   34500
Cards
Entrez_Gene (NCBI)SMIM10L2B  644596  small integral membrane protein 10 like 2B
AliasesLINC00087; NCRNA00087
GeneCards (Weizmann)SMIM10L2B
Ensembl hg19 (Hinxton)ENSG00000196972 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196972 [Gene_View]  chrX:135094985-135098634 [Contig_View]  SMIM10L2B [Vega]
ICGC DataPortalENSG00000196972
TCGA cBioPortalSMIM10L2B
AceView (NCBI)SMIM10L2B
Genatlas (Paris)SMIM10L2B
WikiGenes644596
SOURCE (Princeton)SMIM10L2B
Genetics Home Reference (NIH)SMIM10L2B
Genomic and cartography
GoldenPath hg38 (UCSC)SMIM10L2B  -     chrX:135094985-135098634 -  Xq26.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SMIM10L2B  -     Xq26.3   [Description]    (hg19-Feb_2009)
EnsemblSMIM10L2B - Xq26.3 [CytoView hg19]  SMIM10L2B - Xq26.3 [CytoView hg38]
Mapping of homologs : NCBISMIM10L2B [Mapview hg19]  SMIM10L2B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK123302 BX113676
RefSeq transcript (Entrez)NM_001348255
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SMIM10L2B
Cluster EST : UnigeneHs.656427 [ NCBI ]
CGAP (NCI)Hs.656427
Alternative Splicing GalleryENSG00000196972
Gene ExpressionSMIM10L2B [ NCBI-GEO ]   SMIM10L2B [ EBI - ARRAY_EXPRESS ]   SMIM10L2B [ SEEK ]   SMIM10L2B [ MEM ]
Gene Expression Viewer (FireBrowse)SMIM10L2B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)644596
GTEX Portal (Tissue expression)SMIM10L2B
Human Protein AtlasENSG00000196972-SMIM10L2B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0DMW5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0DMW5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0DMW5
Splice isoforms : SwissVarP0DMW5
PhosPhoSitePlusP0DMW5
Domains : Interpro (EBI)SMIM10   
Domain families : Pfam (Sanger)DUF4560 (PF15118)   
Domain families : Pfam (NCBI)pfam15118   
Conserved Domain (NCBI)SMIM10L2B
DMDM Disease mutations644596
Blocks (Seattle)SMIM10L2B
SuperfamilyP0DMW5
Human Protein Atlas [tissue]ENSG00000196972-SMIM10L2B [tissue]
Peptide AtlasP0DMW5
Protein Interaction databases
DIP (DOE-UCLA)P0DMW5
IntAct (EBI)P0DMW5
FunCoupENSG00000196972
BioGRIDSMIM10L2B
STRING (EMBL)SMIM10L2B
ZODIACSMIM10L2B
Ontologies - Pathways
QuickGOP0DMW5
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkSMIM10L2B
Atlas of Cancer Signalling NetworkSMIM10L2B
Wikipedia pathwaysSMIM10L2B
Orthology - Evolution
OrthoDB644596
GeneTree (enSembl)ENSG00000196972
Phylogenetic Trees/Animal Genes : TreeFamSMIM10L2B
HOVERGENP0DMW5
HOGENOMP0DMW5
Homologs : HomoloGeneSMIM10L2B
Homology/Alignments : Family Browser (UCSC)SMIM10L2B
Gene fusions - Rearrangements
Tumor Fusion PortalSMIM10L2B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSMIM10L2B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SMIM10L2B
dbVarSMIM10L2B
ClinVarSMIM10L2B
1000_GenomesSMIM10L2B 
Exome Variant ServerSMIM10L2B
ExAC (Exome Aggregation Consortium)ENSG00000196972
GNOMAD BrowserENSG00000196972
Genetic variants : HAPMAP644596
Genomic Variants (DGV)SMIM10L2B [DGVbeta]
DECIPHERSMIM10L2B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSMIM10L2B 
Mutations
ICGC Data PortalSMIM10L2B 
TCGA Data PortalSMIM10L2B 
Broad Tumor PortalSMIM10L2B
OASIS PortalSMIM10L2B [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSMIM10L2B
BioMutasearch SMIM10L2B
DgiDB (Drug Gene Interaction Database)SMIM10L2B
DoCM (Curated mutations)SMIM10L2B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SMIM10L2B (select a term)
intoGenSMIM10L2B
Cancer3DSMIM10L2B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSMIM10L2B
MedgenSMIM10L2B
Genetic Testing Registry SMIM10L2B
NextProtP0DMW5 [Medical]
TSGene644596
GENETestsSMIM10L2B
Target ValidationSMIM10L2B
Huge Navigator SMIM10L2B [HugePedia]
snp3D : Map Gene to Disease644596
BioCentury BCIQSMIM10L2B
ClinGenSMIM10L2B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD644596
Chemical/Pharm GKB GenePA164723622
Clinical trialSMIM10L2B
Miscellaneous
canSAR (ICR)SMIM10L2B (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSMIM10L2B
EVEXSMIM10L2B
GoPubMedSMIM10L2B
iHOPSMIM10L2B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:00:36 CET 2017

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