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SMIM11 (small integral membrane protein 11)

Identity

Other aliasC21orf51
FAM165B
HGNC (Hugo) SMIM11
LocusID (NCBI) 54065
Atlas_Id 73562
Location 21q22.11  [Link to chromosome band 21q22]
Location_base_pair Starts at 35747749 and ends at 35761452 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SMIM11   1293
Cards
Entrez_Gene (NCBI)SMIM11  54065  small integral membrane protein 11
AliasesC21orf51; FAM165B
GeneCards (Weizmann)SMIM11
Ensembl hg19 (Hinxton)ENSG00000205670 [Gene_View]  chr21:35747749-35761452 [Contig_View]  SMIM11 [Vega]
Ensembl hg38 (Hinxton)ENSG00000205670 [Gene_View]  chr21:35747749-35761452 [Contig_View]  SMIM11 [Vega]
ICGC DataPortalENSG00000205670
TCGA cBioPortalSMIM11
AceView (NCBI)SMIM11
Genatlas (Paris)SMIM11
WikiGenes54065
SOURCE (Princeton)SMIM11
Genetics Home Reference (NIH)SMIM11
Genomic and cartography
GoldenPath hg19 (UCSC)SMIM11  -     chr21:35747749-35761452 +  21q22.11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SMIM11  -     21q22.11   [Description]    (hg38-Dec_2013)
EnsemblSMIM11 - 21q22.11 [CytoView hg19]  SMIM11 - 21q22.11 [CytoView hg38]
Mapping of homologs : NCBISMIM11 [Mapview hg19]  SMIM11 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK057880 AK092693 AY033902 AY081143 AY081144
RefSeq transcript (Entrez)NM_058182
RefSeq genomic (Entrez)NC_000021 NT_011512
Consensus coding sequences : CCDS (NCBI)SMIM11
Cluster EST : UnigeneHs.656195 [ NCBI ]
CGAP (NCI)Hs.656195
Alternative Splicing GalleryENSG00000205670
Gene ExpressionSMIM11 [ NCBI-GEO ]   SMIM11 [ EBI - ARRAY_EXPRESS ]   SMIM11 [ SEEK ]   SMIM11 [ MEM ]
Gene Expression Viewer (FireBrowse)SMIM11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54065
GTEX Portal (Tissue expression)SMIM11
Protein : pattern, domain, 3D structure
UniProt/SwissProtP58511   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP58511  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP58511
Splice isoforms : SwissVarP58511
PhosPhoSitePlusP58511
Domains : Interpro (EBI)FAM165   
Domain families : Pfam (Sanger)FAM165 (PF14981)   
Domain families : Pfam (NCBI)pfam14981   
Conserved Domain (NCBI)SMIM11
DMDM Disease mutations54065
Blocks (Seattle)SMIM11
SuperfamilyP58511
Human Protein AtlasENSG00000205670
Peptide AtlasP58511
HPRD10751
IPIIPI00067916   IPI00873824   IPI00152478   
Protein Interaction databases
DIP (DOE-UCLA)P58511
IntAct (EBI)P58511
FunCoupENSG00000205670
BioGRIDSMIM11
STRING (EMBL)SMIM11
ZODIACSMIM11
Ontologies - Pathways
QuickGOP58511
Ontology : AmiGOmolecular_function  cellular_component  biological_process  integral component of membrane  
Ontology : EGO-EBImolecular_function  cellular_component  biological_process  integral component of membrane  
NDEx NetworkSMIM11
Atlas of Cancer Signalling NetworkSMIM11
Wikipedia pathwaysSMIM11
Orthology - Evolution
OrthoDB54065
GeneTree (enSembl)ENSG00000205670
Phylogenetic Trees/Animal Genes : TreeFamSMIM11
HOVERGENP58511
HOGENOMP58511
Homologs : HomoloGeneSMIM11
Homology/Alignments : Family Browser (UCSC)SMIM11
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSMIM11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SMIM11
dbVarSMIM11
ClinVarSMIM11
1000_GenomesSMIM11 
Exome Variant ServerSMIM11
ExAC (Exome Aggregation Consortium)SMIM11 (select the gene name)
Genetic variants : HAPMAP54065
Genomic Variants (DGV)SMIM11 [DGVbeta]
DECIPHER (Syndromes)21:35747749-35761452  ENSG00000205670
CONAN: Copy Number AnalysisSMIM11 
Mutations
ICGC Data PortalSMIM11 
TCGA Data PortalSMIM11 
Broad Tumor PortalSMIM11
OASIS PortalSMIM11 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSMIM11
BioMutasearch SMIM11
DgiDB (Drug Gene Interaction Database)SMIM11
DoCM (Curated mutations)SMIM11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SMIM11 (select a term)
intoGenSMIM11
Cancer3DSMIM11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSMIM11
Genetic Testing Registry SMIM11
NextProtP58511 [Medical]
TSGene54065
GENETestsSMIM11
Huge Navigator SMIM11 [HugePedia]
snp3D : Map Gene to Disease54065
BioCentury BCIQSMIM11
ClinGenSMIM11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54065
Chemical/Pharm GKB GenePA162387008
Clinical trialSMIM11
Miscellaneous
canSAR (ICR)SMIM11 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSMIM11
EVEXSMIM11
GoPubMedSMIM11
iHOPSMIM11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:44:11 CET 2017

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