Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SMIM11A (small integral membrane protein 11A)

Identity

Alias_namesC21orf51
FAM165B
SMIM11
chromosome 21 open reading frame 51
family with sequence similarity 165, member B
small integral membrane protein 11
Other aliasSMIM11B
HGNC (Hugo) SMIM11A
LocusID (NCBI) 54065
Atlas_Id 77772
Location 21q22.11  [Link to chromosome band 21q22]
Location_base_pair Starts at 34375450 and ends at 34389154 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SMIM11A (21q22.11) / TOM1L1 (17q22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SMIM11A   1293
Cards
Entrez_Gene (NCBI)SMIM11A  54065  small integral membrane protein 11A
AliasesC21orf51; FAM165B; SMIM11; SMIM11B
GeneCards (Weizmann)SMIM11A
Ensembl hg19 (Hinxton)ENSG00000205670 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205670 [Gene_View]  chr21:34375450-34389154 [Contig_View]  SMIM11A [Vega]
ICGC DataPortalENSG00000205670
TCGA cBioPortalSMIM11A
AceView (NCBI)SMIM11A
Genatlas (Paris)SMIM11A
WikiGenes54065
SOURCE (Princeton)SMIM11A
Genetics Home Reference (NIH)SMIM11A
Genomic and cartography
GoldenPath hg38 (UCSC)SMIM11A  -     chr21:34375450-34389154 +  21q22.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SMIM11A  -     21q22.11   [Description]    (hg19-Feb_2009)
EnsemblSMIM11A - 21q22.11 [CytoView hg19]  SMIM11A - 21q22.11 [CytoView hg38]
Mapping of homologs : NCBISMIM11A [Mapview hg19]  SMIM11A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK057880 AK092693 AY033902 AY081143 AY081144
RefSeq transcript (Entrez)NM_058182
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SMIM11A
Cluster EST : UnigeneHs.656195 [ NCBI ]
CGAP (NCI)Hs.656195
Alternative Splicing GalleryENSG00000205670
Gene ExpressionSMIM11A [ NCBI-GEO ]   SMIM11A [ EBI - ARRAY_EXPRESS ]   SMIM11A [ SEEK ]   SMIM11A [ MEM ]
Gene Expression Viewer (FireBrowse)SMIM11A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54065
GTEX Portal (Tissue expression)SMIM11A
Human Protein AtlasENSG00000205670-SMIM11A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP58511   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP58511  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP58511
Splice isoforms : SwissVarP58511
PhosPhoSitePlusP58511
Domains : Interpro (EBI)SMIM11A   
Domain families : Pfam (Sanger)FAM165 (PF14981)   
Domain families : Pfam (NCBI)pfam14981   
Conserved Domain (NCBI)SMIM11A
DMDM Disease mutations54065
Blocks (Seattle)SMIM11A
SuperfamilyP58511
Human Protein Atlas [tissue]ENSG00000205670-SMIM11A [tissue]
Peptide AtlasP58511
HPRD10751
IPIIPI00067916   IPI00873824   IPI00152478   
Protein Interaction databases
DIP (DOE-UCLA)P58511
IntAct (EBI)P58511
FunCoupENSG00000205670
BioGRIDSMIM11A
STRING (EMBL)SMIM11A
ZODIACSMIM11A
Ontologies - Pathways
QuickGOP58511
Ontology : AmiGOmolecular_function  cellular_component  biological_process  integral component of membrane  
Ontology : EGO-EBImolecular_function  cellular_component  biological_process  integral component of membrane  
NDEx NetworkSMIM11A
Atlas of Cancer Signalling NetworkSMIM11A
Wikipedia pathwaysSMIM11A
Orthology - Evolution
OrthoDB54065
GeneTree (enSembl)ENSG00000205670
Phylogenetic Trees/Animal Genes : TreeFamSMIM11A
HOVERGENP58511
HOGENOMP58511
Homologs : HomoloGeneSMIM11A
Homology/Alignments : Family Browser (UCSC)SMIM11A
Gene fusions - Rearrangements
Fusion: Tumor Portal SMIM11A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSMIM11A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SMIM11A
dbVarSMIM11A
ClinVarSMIM11A
1000_GenomesSMIM11A 
Exome Variant ServerSMIM11A
ExAC (Exome Aggregation Consortium)ENSG00000205670
GNOMAD BrowserENSG00000205670
Genetic variants : HAPMAP54065
Genomic Variants (DGV)SMIM11A [DGVbeta]
DECIPHERSMIM11A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSMIM11A 
Mutations
ICGC Data PortalSMIM11A 
TCGA Data PortalSMIM11A 
Broad Tumor PortalSMIM11A
OASIS PortalSMIM11A [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSMIM11A
BioMutasearch SMIM11A
DgiDB (Drug Gene Interaction Database)SMIM11A
DoCM (Curated mutations)SMIM11A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SMIM11A (select a term)
intoGenSMIM11A
Cancer3DSMIM11A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSMIM11A
Genetic Testing Registry SMIM11A
NextProtP58511 [Medical]
TSGene54065
GENETestsSMIM11A
Target ValidationSMIM11A
Huge Navigator SMIM11A [HugePedia]
snp3D : Map Gene to Disease54065
BioCentury BCIQSMIM11A
ClinGenSMIM11A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54065
Chemical/Pharm GKB GenePA162387008
Clinical trialSMIM11A
Miscellaneous
canSAR (ICR)SMIM11A (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSMIM11A
EVEXSMIM11A
GoPubMedSMIM11A
iHOPSMIM11A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:28:04 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.