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SMIM11B (small integral membrane protein 11B)

Identity

Other alias-
HGNC (Hugo) SMIM11B
LocusID (NCBI) 102723553
Atlas_Id 77970
Location 21q22.11  [Link to chromosome band 21q22]
Location_base_pair Starts at 34375480 and ends at 34389154 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SMIM11B   51846
Cards
Entrez_Gene (NCBI)SMIM11B  102723553  small integral membrane protein 11B
Aliases
GeneCards (Weizmann)SMIM11B
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr21:34375480-34389154 [Contig_View]  SMIM11B [Vega]
TCGA cBioPortalSMIM11B
AceView (NCBI)SMIM11B
Genatlas (Paris)SMIM11B
WikiGenes102723553
SOURCE (Princeton)SMIM11B
Genetics Home Reference (NIH)SMIM11B
Genomic and cartography
GoldenPath hg38 (UCSC)SMIM11B  -     chr21:34375480-34389154 +  21q22.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SMIM11B  -     21q22.11   [Description]    (hg19-Feb_2009)
EnsemblSMIM11B - 21q22.11 [CytoView hg19]  SMIM11B - 21q22.11 [CytoView hg38]
Mapping of homologs : NCBISMIM11B [Mapview hg19]  SMIM11B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AW901268 BP194116 DB526804
RefSeq transcript (Entrez)NM_001313692
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SMIM11B
Cluster EST : UnigeneHs.656195 [ NCBI ]
CGAP (NCI)Hs.656195
Gene ExpressionSMIM11B [ NCBI-GEO ]   SMIM11B [ EBI - ARRAY_EXPRESS ]   SMIM11B [ SEEK ]   SMIM11B [ MEM ]
Gene Expression Viewer (FireBrowse)SMIM11B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)102723553
GTEX Portal (Tissue expression)SMIM11B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TCY0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TCY0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TCY0
Splice isoforms : SwissVarQ8TCY0
PhosPhoSitePlusQ8TCY0
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SMIM11B
DMDM Disease mutations102723553
Blocks (Seattle)SMIM11B
SuperfamilyQ8TCY0
Peptide AtlasQ8TCY0
Protein Interaction databases
DIP (DOE-UCLA)Q8TCY0
IntAct (EBI)Q8TCY0
BioGRIDSMIM11B
STRING (EMBL)SMIM11B
ZODIACSMIM11B
Ontologies - Pathways
QuickGOQ8TCY0
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkSMIM11B
Atlas of Cancer Signalling NetworkSMIM11B
Wikipedia pathwaysSMIM11B
Orthology - Evolution
OrthoDB102723553
Phylogenetic Trees/Animal Genes : TreeFamSMIM11B
HOVERGENQ8TCY0
HOGENOMQ8TCY0
Homologs : HomoloGeneSMIM11B
Homology/Alignments : Family Browser (UCSC)SMIM11B
Gene fusions - Rearrangements
Tumor Fusion PortalSMIM11B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSMIM11B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SMIM11B
dbVarSMIM11B
ClinVarSMIM11B
1000_GenomesSMIM11B 
Exome Variant ServerSMIM11B
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP102723553
Genomic Variants (DGV)SMIM11B [DGVbeta]
DECIPHERSMIM11B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSMIM11B 
Mutations
ICGC Data PortalSMIM11B 
TCGA Data PortalSMIM11B 
Broad Tumor PortalSMIM11B
OASIS PortalSMIM11B [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSMIM11B
BioMutasearch SMIM11B
DgiDB (Drug Gene Interaction Database)SMIM11B
DoCM (Curated mutations)SMIM11B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SMIM11B (select a term)
intoGenSMIM11B
Cancer3DSMIM11B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSMIM11B
MedgenSMIM11B
Genetic Testing Registry SMIM11B
NextProtQ8TCY0 [Medical]
TSGene102723553
GENETestsSMIM11B
Target ValidationSMIM11B
Huge Navigator SMIM11B [HugePedia]
snp3D : Map Gene to Disease102723553
BioCentury BCIQSMIM11B
ClinGenSMIM11B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD102723553
Clinical trialSMIM11B
Miscellaneous
canSAR (ICR)SMIM11B (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSMIM11B
EVEXSMIM11B
GoPubMedSMIM11B
iHOPSMIM11B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:43:17 CET 2017

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